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4D Flow with MRI

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4D Flow with MRI

Annual Review of Biomedical Engineering

Vol. 22:103-126 (Volume publication date June 2020)
First published as a Review in Advance on March 10, 2020
https://doi.org/10.1146/annurev-bioeng-100219-110055

Gilles Soulat,1 Patrick McCarthy,2 and Michael Markl1,3

1Department of Radiology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois 60611, USA; email: [email protected]

2Division of Cardiac Surgery, Department of Surgery, Feinberg School of Medicine, Northwestern University, Chicago, Illinois 60611, USA; email: [email protected]

3Department of Biomedical Engineering, McCormick School of Engineering, Northwestern University, Evanston, Illinois 60208, USA; email: [email protected]

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  • INTRODUCTION
  • TECHNICAL ASPECTS
  • APPLICATIONS
  • FUTURE DIRECTIONS
  • CONCLUSIONS
  • disclosure statement
  • literature cited

Abstract

Magnetic resonance imaging (MRI) has become an important tool for the clinical evaluation of patients with cardiac and vascular diseases. Since its introduction in the late 1980s, quantitative flow imaging with MRI has become a routine part of standard-of-care cardiothoracic and vascular MRI for the assessment of pathological changes in blood flow in patients with cardiovascular disease. More recently, time-resolved flow imaging with velocity encoding along all three flow directions and three-dimensional (3D) anatomic coverage (4D flow MRI) has been developed and applied to enable comprehensive 3D visualization and quantification of hemodynamics throughout the human circulatory system. This article provides an overview of the use of 4D flow applications in different cardiac and vascular regions in the human circulatory system, with a focus on using 4D flow MRI in cardiothoracic and cerebrovascular diseases.

Keywords

4D flow, magnetic resonance imaging, blood flow, hemodynamics

1. INTRODUCTION

Noninvasive cardiovascular evaluation with magnetic resonance imaging (MRI) is widely used to evaluate cardiovascular disease based on both morphological and functional information. Initial applications of MRI included the assessment of cardiovascular abnormalities, such as arterial stenosis, impaired global cardiac function, and myocardial fibrosis and scarring. The past decades have seen the rise of MRI-based blood flow quantification, including the integration of flow imaging with two-dimensional (2D) phase contrast (PC) MRI into clinical guidelines and algorithms (1). More recently, the use of time-resolved 3D PC MRI with three-directional flow velocity encoding, referred to as 4D flow MRI, allows for the comprehensive in vivo measurement of 3D blood flow dynamics in the heart and large vessels, with full volumetric coverage throughout the cardiac cycle. The resulting data (3D + time + 3 velocity directions) allow for the calculation of a multitude of derived fluid mechanics parameters, such as wall shear stress (WSS), kinetic energy, and pressure gradients. The opportunity to better understand and assess in vivo 3D blood flow dynamics has made both the acquisition methods and applications of 4D flow the subject of intense ongoing research in the cardiovascular imaging community.

In this review, we focus on the most recent technical advances, in terms of both optimization of MRI data acquisition and advanced post-processing. For a description of the more standard technical aspects, the reader is referred to two 2015 consensus papers (2, 3). In addition, this article provides an overview of the use of 4D flow applications in different cardiac and vascular regions in the human circulatory system, with a focus on using 4D flow MRI in cardiothoracic and cerebrovascular diseases.

2. TECHNICAL ASPECTS

2.1. Traditional 2D Flow Imaging with MRI

PC MRI (also termed flow-sensitive MRI or MR velocity mapping) was originally described in the 1980s (4–6) and takes advantage of the direct relationship between blood flow velocity and the phase of the MRI signal. To eliminate unwanted background phase effects, two acquisitions with different velocity-dependent signal phases are needed to encode (using bipolar magnetic field gradients) and measure blood flow velocity along a single direction. The signal intensities in the resulting phase-difference images are directly related to the blood flow velocity and can thus be used to visualize and quantify blood flow.

For cardiovascular applications, the 2D PC data are collected over multiple cardiac cycles using ECG-gated imaging to measure time-resolved pulsatile blood flow. For a standard 2D PC MRI clinical protocol, data acquisition typically includes single-direction velocity measurement orthogonal to a 2D imaging slice (through-plane encoding) and is performed during a 10–20-s breath-hold period. Following image reconstruction, 2D PC MRI yields a series of anatomic (magnitude) and flow velocity (phase-difference) images that represent the temporal changes in morphology and blood flow during the cardiac cycle.

2.2. 4D Flow MRI: Data Acquisition

In 4D flow MRI (also termed 4D PC or 3D time-resolved PC with three-directional velocity encoding), velocity is encoded along all three spatial dimensions throughout the cardiac cycle, thus providing a time-resolved 3D velocity field. As shown in Figure 1a, three-directional velocity measurements can be efficiently achieved by using interleaved four-point velocity encoding (Venc), which acquires one reference image and three velocity-encoded images along three orthogonal (x, y, z) directions. Similar to 2D PC MRI, data acquisition is synchronized with the cardiac cycle, and data collection is distributed over multiple cardiac cycles using so-called k-space segmentation techniques (only a fraction of the entire 4D flow data is measured during each cardiac cycle, and the data are successively collected over multiple cardiac cycles). After completion of the 4D flow acquisition, four time-resolved 3D data sets are generated (these are magnitude data depicting anatomy and three flow data sets representing the velocities Vx, Vy, and Vz) (Figure 1b). The large amount of data collected over multiple RR intervals made 4D flow MRI incompatible with use in the clinical setting prior to developments in the 1990s and 2000s (i.e., the high amplitude magnetic field gradients, phased array coils with multireceiver channels, parallel imaging). Due to the large amount of data that has to be collected (three spatial dimensions, three velocity directions, time over the cardiac cycle), total 4D flow MRI scan times may still range between 5 and 15 min (depending on heart rate, spatiotemporal resolution, and anatomic coverage). Thus, for thoracic and abdominal applications, respiration control is needed to minimize breathing artifacts. Different strategies have been applied, including the use of respiratory bellows, navigator gating, and self-gating techniques (7–11).

figure
Figure 1 

2.2.1. 4D flow MRI: velocity sensitivity.

Venc is an important, user-defined parameter, setting the maximum flow velocity that can be acquired without velocity aliasing. When the measured blood flow velocity exceeds the acquisition setting for Venc, velocity aliasing can occur, and this is visible as a sudden change from high to low velocity within a region of flow. Thus, accurate flow visualization and quantification may be compromised unless antialiasing correction can be successfully performed. It is important to note, however, that velocity noise is directly related to Venc. Therefore, selecting a high Venc value may alleviate the issue of velocity aliasing, but it will also increase the level of velocity noise in flow velocity images. As a result, Venc should ideally be selected to be as high as needed to avoid aliasing but as low as possible to reduce velocity noise (typical settings: Venc = 150–200 cm/s in the thoracic aorta, 250–400 cm/s in an aorta with aortic valve stenosis or coarctation, or 80–120 cm/s for cerebrovascular applications). If a large imaging volume with various vessels is examined, there may be no optimal Venc setting, so the value must be chosen in accordance with the clinical question.

2.2.2. Acceleration techniques: k-space sampling and sparsity exploitation.

Long scan times on the order of 5–15 min have previously relegated 4D flow MRI to the realm of research. However, current implementation is quickly approaching clinically feasible scan times, on the order of 2–8 min. Parallel imaging takes advantage of multichannel receiver coils, with reconstruction either in the image domain using sensitivity encoding techniques (known as SENSE) or in the k-space domain using generalized autocalibrating partially parallel acquisition (known as GRAPPA). These techniques are commonly used in MRI applications, including 4D flow, allowing a two- or threefold acceleration (Figure 1d). Recently, more advanced methods such as the k-t broad-use linear acquisition speed-up technique (known as k-t BLAST) (12), k-t GRAPPA (13), k-t principal component analysis (known as k-t PCA) (14), and circular Cartesian undersampling (known as CIRCUS) (15) have allowed for even greater imaging acceleration factors (Figure 1d). Another promising technique to accelerate 4D flow MRI is compressed sensing in which data are acquired in a sparse and random manner, and this is followed by nonlinear recovery of the data (16). For example, it has recently been shown that aortic 4D flow MRI with compressed sensing can be performed with scan times on the order of 2–3 min without substantial degradation of image quality (10).

Alternative techniques that are increasingly used to accelerate 4D flow MRI exploit non-Cartesian data sampling strategies, such as vastly undersampled isotropic voxel radial projection imaging (known as PC-VIPR), which uses a 3D radial sampling pattern with angular undersampling (17) or spiral data acquisition (18). Radial sampling has two advantages over Cartesian read-outs: (a) Sparse sampling results in streak image artifacts instead of foldover artifacts, which allows for higher undersampling factors (17); and (b) the center of the k-space is continuously sampled, and this results in insensitivity to a patient's motion (20). As an alternative, spiral k-space sampling can cover the entire k space uniformly and rapidly, allowing for rapid measurements of 4D flow MRI velocity (9, 11, 21). However, both radial and spiral sampling are sensitive to eddy current effects, which require efficient correction strategies, and image reconstruction is more computationally demanding (11). An illustration of acceleration techniques is provided in Figure 1c,d.

2.3. Pre- and Post-Processing for Standard Visualization and Quantification

4D flow MRI data are affected by systematic velocity encoding errors caused by magnetic field inhomogeneity, concomitant magnetic fields (Maxwell terms), and eddy currents. Thus, data preprocessing is an important part of any data analysis workflow to correct background phase-offset errors (3). In addition, denoising and velocity antialiasing may also be applied (22).

After preprocessing, a 3D PC MR angiography based on a combination of magnitude and velocity data can be calculated to guide segmentation and flow visualization. Several 3D blood flow visualizing options can be employed to present the 4D flow data.

▪ 

Volumetric and maximum intensity projections of peak velocity can be used for easy volumetric identification of peak flow velocities.

▪ 

3D streamlines represent the instantaneous blood-flow vector field for a single cardiac time frame and are used to visualize the spatial distribution and orientation of blood flow velocities. Color-coding by velocity magnitude facilitates the visual identification of regions with high systolic flow velocities (Figure 2).

figure
Figure 2 

▪ 

For visualization of the temporal evolution of 3D blood flow, time-resolved path lines can be used to display (in movie mode) the dynamic information and changes in blood flow during the cardiac cycle (3).

There are several pitfalls in 4D flow imaging that are related to the acquisition of data, the patient, and processing; Table 1 summarizes the sources of errors and strategies for error mitigation.

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Table 1

Potential sources of errors in 4D flow MRI: types, consequences, and proposed mitigation strategies

2.4. Validation of Flow and Velocity Measurements

As for any novel quantitative imaging technique, validating the blood flow velocities measured by 4D flow is essential. Due to the lack of a gold standard measurement technique for the in vivo assessment of time-resolved 3D blood flow velocities inside the human body, a number of alternative approaches and surrogate validation metrics have been studied including:

▪ 

using dedicated pulsatile and steady in vitro flow phantoms (23–26)

▪ 

making comparisons with Doppler ultrasound (limited by 2D analysis planes and single-direction velocity) (27–29)

▪ 

making comparisons with standard 2D PC MRI in healthy volunteers (30–34) or patients (35–37) (limited by two analysis planes and single-direction velocity encoding)

▪ 

using internal flow consistency, based on the principle of mass conservation—that is, flow must be the same between the input and the output or between a main vessel and the sum of the branching vessels (38–40)

▪ 

making comparisons with patient-specific computational fluid dynamics (CFD), which is comparable to 4D flow because it provides representation of multidirectional volumetric velocities; several relevant studies have shown good accuracy using this comparison to quantify WSS (even if it was underestimated) and energy-derived parameters (41–43).

Studies across different institutions and MR systems have demonstrated that 4D flow MRI permits flow volume quantification that is comparable to 2D PC MRI and has good scan–rescan repeatability. Further, 4D flow MRI measures velocity in all spatial directions, has superior spatial coverage, and has been shown to be better at capturing the peak velocity of a stenotic jet (44).

2.5. Advanced Post-Processing

4D flow MRI offers the opportunity to derive advanced hemodynamic measures, such as vorticity and helicity, WSS, pressure gradients, viscous energy loss, turbulent kinetic energy, and pulse wave velocity (PWV). A more detailed description of advanced metrics is provided in Table 2. Some of these advanced metrics have become available in commercial software (an example of 4D flow advanced post-processing in a healthy thoracic aorta is shown in Figure 2), whereas most are still relegated to academic research tools.

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Table 2

Advanced 4D flow MRI hemodynamic metrics

3. APPLICATIONS

Initial applications of 4D flow MRI were focused on the heart and large vessels, such as the aorta and pulmonary arteries. Nonetheless, 4D flow MRI can be applied to other vascular territory throughout the human circulatory system, such as the cerebral large arteries and veins, carotid arteries, and abdominal (liver and renal arteries) and peripheral vessels. An overview of standard and advanced post-processing applications is provided in Table 3 and examples are shown in Figure 3. In this review, we focus on the use of 4D flow MRI for the comprehensive assessment of thoracic aortic and intracranial hemodynamics.

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Table 3

Overview of applications of 4D flow–derived hemodynamic parameters

figure
Figure 3 

3.1. Thoracic Aorta

Newly evolving MRI techniques such as 4D flow MRI, as well as the clinical need for continued improvements in patient diagnosis, risk stratification, and monitoring of surgical and medical treatment, have led to strong interest in applying advanced MRI techniques to diseases of the thoracic aorta. Trends in thoracic aorta MRI are moving beyond simple anatomic descriptions and aortic diameter measurements to better capture changes in aortic flow and functional impairment that result from aortic pathologies or aortic valve dysfunction.

3.1.1. Bicuspid aortic valve–related aortopathy.

Bicuspid aortic valve (BAV) is a congenital fusion of the leaflets of the aortic valve affecting 1% to 2% of the general population, predominantly males. Patients with BAV have a higher risk of valve dysfunction or severe disease of the ascending aorta (dilatation, aneurysm, dissection), or both. However, the underlying mechanisms of the development of aortic disease are not fully understood, and there is ongoing debate regarding the relative contribution of genetic and hemodynamic abnormalities to BAV-associated aortopathy. 4D flow MRI–based in vivo analysis of BAV-mediated changes in aortic flow patterns has helped shed new light on the underlying mechanisms of aortopathy development in patients with BAV. 4D flow MRI studies have shown that BAV is associated with complex, disturbed blood flow dynamics when compared with those of participants with normal tricuspid aortic valves, even in the absence of aortic valve disease or aortic dilatation (45). An early 4D flow study contributed evidence that these flow alterations resulted in elevated WSS in the ascending aorta—that is, BAV patients experienced significant differences in hemodynamic forces implicated in vessel wall remodeling (46). Altered aortic WSS and flow patterns in BAV were confirmed by other studies (47, 48). Moreover, aortic WSS patterns differed based on BAV valve fusion type (49, 50) and were closely associated with the expression of different aortopathy phenotypes (51–53): Right-to-left coronary cusp fusion was associated with elevated WSS in the anterior wall, while right-to-noncoronary cusp fusion was associated with elevated WSS in the right posterior wall and aortic arch dilatation (Figure 4). In addition, there is a high level of evidence that WSS is mediated by valve function and is increased in cases of aortic valve stenosis (54, 55) or regurgitation (56).

figure
Figure 4 

Recently, the application of the concept of an aorta atlas established confidence intervals for normal WSS based on results in a healthy control cohort (57, 58). This method was successfully applied to BAV patients to create WSS heat maps showing areas of increased or decreased WSS (i.e., occurring outside 95% of normal values) (59, 60) (Figure 4). In a prospective study with tissue collection from 20 BAV patients undergoing aortic surgery, Guzzardi et al. (61) showed a relationship between a heat map increase in WSS (>95% of normal values), extracellular matrix dysregulation (an increase in matrix metalloproteinase and transforming growth factor-β), and elastic fiber degeneration. This study demonstrated for the first time in BAV aortopathy a relationship between altered hemodynamics as assessed by 4D flow and histological wall damage. Moreover, in cases of aortic stenosis associated with BAV, elastic fiber thinning was also correlated with WSS (62).

Interestingly, a recent 4D flow MRI study found that relatives of patients with BAV who did not have aortic valve abnormalities presented with altered aortic shape and increased vortex flow (63). These results highlight the need for more data to better understand the link between the genetic disorder, the expression of the valvulopathy, and the alteration of aortic hemodynamics.

3.1.2. Marfan syndrome.

Marfan syndrome is a genetic connective tissue disease with a high risk of aortic wall abnormalities that lead to aortic dilatation complicated by dissection or rupture. Disturbed blood flow patterns, such as local helix flow, have been described in the aortic root and in the proximal descending aorta (64). Circumferential WSS and peak systolic velocities were increased in patients with Marfan syndrome when compared with controls matched for degree of aortic dilatation (65). Segmental differences in WSS occurred at the inner curvature of the proximal part of the ascending aorta and in the anterior part of the more distal ascending aorta (65), while lower values were observed in the inner proximal descending aorta segment, correlating with a helix flow pattern (66). These results were confirmed in a pediatric cohort in which an inverse relationship was found between WSS and aortic diameter (67). Notably, helical flow and low WSS were found at locations known to develop aortic dissection. These findings were highlighted by the case of a patient developing a type B aortic dissection at a region of low WSS that was identified in a 4D flow study 3 years prior to the dissection event (68). Nonetheless, the predictive value of WSS alteration remains unclear, and further longitudinal studies are required. Another study reported increased aortic PWV (i.e., stiffness), in agreement with previous aortic distensibility studies (69).

3.1.3. Aortic dissection.

Aortic dissection is a life-threatening aortic wall injury leading to the creation of both a true and a false lumen. Pilot 4D flow MRI studies have been used to quantify blood flow in true and false lumens (70) and demonstrated its utility in improving the detection of hemodynamically active dissection flap tears and flow reentry sites (71).

3.1.4. Aortic coarctation.

Aortic coarctation is a congenital narrowing (stenosis) of the aorta, often addressed by surgical repair in childhood. However, even after successful repair, aortic arch shape is usually altered, with an angulated aortic arch leading to marked helical flow (35), and patients often develop hypertension during follow-up. In addition, coarctation patients present with increased overall WSS (72), probably linked to both vortical and accelerated flows, even in the absence of a significant stenosis.

To assess coarctation severity, peak flow velocities at the location of the vessel narrowing (e.g., measured by Doppler echocardiography) are used to estimate the local pressure gradient via the simplified Bernoulli equation (72). A more comprehensive evaluation of pressure change in the aorta can be achieved by 4D flow–based 3D pressure mapping (73, 74). This application was validated against cardiac catheterization in a small group of patients undergoing endovascular treatment, and further studies are needed to assess its contribution to guiding the management of coarctation (75).

3.1.5. Aortic surgical or endovascular treatment.

Several studies have evaluated the impact of different types of aortic valve prostheses and aortic root surgery on postintervention aortic hemodynamics. Valve-sparing aortic root replacement, mechanical valve replacement, and the Ross procedure resulted in better restoration of normal physiological flow patterns compared with the use of a bioprosthetic valve and transaortic valve replacement (76–80). However, most studies included only small sample sizes and did not control for age or aortic shape (e.g., patients undergoing transaortic valve replacement were older than those receiving surgical bioprotheses).

Following endovascular repair, 4D flow MRI may be more sensitive than computed tomography for detecting endoleaks (i.e., persistent blood flow within the aneurysm sac) (81), even without contrast injection (82), and this could be useful for preventing complications in this patient population that frequently has impaired renal function.

3.2. Intracranial Vessels

Transcranial Doppler ultrasound is routinely used for cerebrovascular flow measurements, but the technique is limited by the acoustic windows of the head. As an alternative, 4D flow MRI can be used to measure 3D cerebrovascular blood flow dynamics. Emerging applications include the hemodynamic evaluation of intracranial aneurysms, arteriovenous malformations (AVMs), and intracranial atherosclerotic disease (Figure 5). Of note, cerebral blood flow is highly influenced by age, and age-matched control groups are essential in clinical studies (83).

figure
Figure 5 

3.2.1. Intracranial atherosclerotic stenosis and vein thrombosis.

Intracranial atherosclerotic plaques can alter local and global hemodynamics, particularly proximal or distal to stenosed vessels. 4D flow can be useful to estimate intracranial artery stenosis and its impact on cerebrovascular hemodynamics (Figure 5). In a study that included 22 patients, Wu et al. (84) found that intracranial atherosclerotic lesions altered distal flow and also altered flow in the ipsilateral collateral arteries. Pressure gradient estimation (i.e., quantification of stenosis severity) is feasible using the modified Bernoulli equation, as recently presented by Vali et al. (85) in a study of 16 patients.

In a prospective longitudinal study with 6 months of follow-up, Schuchardt et al. (86) were able to detect flow changes related to cerebral venous thrombosis, showing stagnant flow, acceleration in nonocclusive thrombosis, and change in flow directions, as well as normalization when anticoagulation treatment achieved complete recanalization.

3.2.2. Cerebral aneurysm.

A large number of studies investigating flow patterns in intracranial aneurysms were based on CFD techniques used in conjunction with participant-specific boundary conditions extracted from medical images. In addition, 4D flow studies have demonstrated the feasibility of computing WSS in intracranial aneurysms in comparisons with CFD (87–89) (Figure 5). These studies confirmed that aneurysm size and morphology were significantly correlated with aneurysm velocity distribution, vorticity, and WSS: Saccular aneurysms had higher peak velocity than did fusiform aneurysms, while both vorticity and WSS were higher in giant saccular aneurysms compared with small saccular and fusiform aneurysms (90).

In a study including 70 unruptured cerebral aneurysms, Futami et al. (91) demonstrated that the ratio of the aneurysm to the parent vessel size (a morphological predictor of rupture) was significantly associated with inflow rate and aneurysm jet flow patterns, highlighting the potential for flow dynamics to improve stratification for rupture risk.

3.2.3. Arteriovenous malformation and fistulas.

In patients with cerebral AVMs, flow information is potentially valuable for gaining a better understanding of the impact of a focal AVM on flow redistribution in the brain and guiding planning for embolization treatment. Recent studies have demonstrated the potential of 4D flow MRI for evaluating global and regional AVM flow characteristics in arteries feeding the AVM as well as in contralateral arteries and draining veins. The findings showed that 4D flow MRI could assess treatment-induced changes in cerebrovascular flow distribution and demonstrated significant associations between 4D flow metrics, cerebral perfusion indices, and AVM risk factors, such as Spetzler–Martin grade (92). To derive a better understanding of these changes in regional circle of Willis flow dynamics induced by an AVM, a systematic quantitative analysis based on a flow network graph has recently been introduced (93) (Figure 5).

4. FUTURE DIRECTIONS

Recent developments related to highly accelerated 4D flow MRI have resulted in increased flexibility in its application, with reduced scan times and increases in spatiotemporal resolution. These developments have led to the more widespread use of 4D flow MRI, but further improvements in spatial resolution are needed to reliably quantify vascular hemodynamics near the vessel wall or in small arteries. Developments have also shown that the image quality of 4D flow MRI and its dynamic velocity range (e.g., fast peak systolic forward flow and slow diastolic backward flow) can be further improved by dual- or multi-Venc flow encoding. By interleaving high and low Venc acquisitions and combining these with imaging acceleration techniques, dual-Venc 4D flow MRI has shown promise for making detailed velocity measurements in neurovascular and aortic applications (23, 94).

As described in this review, many useful 4D flow MRI applications have been demonstrated, but multicenter validation and standardization are needed. Furthermore, there is a lack of outcome studies for most of the 4D flow metrics. These studies are urgently needed to prove that it has added value in the clinical setting beyond standard Doppler ultrasound or 2D PC MRI techniques. In addition, the use of 4D flow imaging has substantially expanded, but its use is mostly still limited to large academic centers, and it needs to be better integrated into the clinical workflow. To this end, efforts should focus on distributing accelerated 4D flow MRI imaging protocols and developing more efficient data analysis solutions. Current and future efforts will be dedicated to identifying the most promising 4D flow metrics, and these will be applied increasingly widely.

5. CONCLUSIONS

4D flow MRI is a technique applicable for use throughout the body, allowing for the computation of multiple hemodynamic metrics derived from a wealth of data. And there is intense ongoing research into sequence optimization, the automation of data processing, the development of new flow metrics, and continuing to expand its application to an increasing number of cardiovascular pathologies.

disclosure statement

M.M. has received research support from Siemens Healthineers, received research grants from Circle Cardiovascular Imaging and Cryolife Inc., and is a consultant for Circle Cardiovascular Imaging.

acknowledgments

The authors thank Dr. Susanne Schnell, Maria Aristova, and Justin Baraboo for their help in preparing the figures. G.S. received grant support from the French College of Radiology Teachers (CERF) and French Radiology Society (SFR).

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                                                                                                                      Annual Review of Public Health Vol. 28: 393 - 412
                                                                                                                      • Quality Improvement in Public Health Emergency Preparedness

                                                                                                                        Michael Seid,1 Debra Lotstein,1 Valerie L. Williams,2 Christopher Nelson,3 Kristin J. Leuschner,1 Allison Diamant,1,4 Stefanie Stern,1 Jeffrey Wasserman,1 and Nicole Lurie21RAND Corporation, Santa Monica, California 90407; email: [email protected]2RAND Corporation, Arlington, Virginia 222023RAND Corporation, Pittsburgh, Pennsylvania 152134Department of Pediatrics, University of California, Los Angeles, California 90095
                                                                                                                        Annual Review of Public Health Vol. 28: 19 - 31
                                                                                                                        • Seasonality of Infectious Diseases

                                                                                                                          David N. FismanChild Health Evaluative Sciences, Research Institute of the Hospital for Sick Children, and Ontario Provincial Public Health Laboratory, Toronto, Ontario, M5G 1E2, Canada; email: [email protected]
                                                                                                                          Annual Review of Public Health Vol. 28: 127 - 143
                                                                                                                          • Quality Improvement in Public Health Emergency Preparedness

                                                                                                                            Michael Seid,1 Debra Lotstein,1 Valerie L. Williams,2 Christopher Nelson,3 Kristin J. Leuschner,1 Allison Diamant,1,4 Stefanie Stern,1 Jeffrey Wasserman,1 and Nicole Lurie21RAND Corporation, Santa Monica, California 90407; email: [email protected]2RAND Corporation, Arlington, Virginia 222023RAND Corporation, Pittsburgh, Pennsylvania 152134Department of Pediatrics, University of California, Los Angeles, California 90095
                                                                                                                            Annual Review of Public Health Vol. 28: 19 - 31
                                                                                                                            • Assessing Public Health Emergency Preparedness: Concepts, Tools, and Challenges

                                                                                                                              Christopher Nelson,1 Nicole Lurie,2 and Jeffrey Wasserman31RAND Corporation, Pittsburgh, Pennsylvania 15213; email: [email protected]2RAND Corporation, Arlington, Virginia 22202; email: [email protected]3RAND Corporation, Santa Monica, California 90401; email: [email protected]
                                                                                                                              Annual Review of Public Health Vol. 28: 1 - 18
                                                                                                                              • Adverse Late Effects of Childhood Cancer and Its Treatment on Health and Performance

                                                                                                                                Kirsten K. Ness1 and James G. Gurney21Division of Epidemiology and Clinical Research, Department of Pediatrics, University of Minnesota, Minneapolis, Minnesota 55455; email: [email protected]2Child Health and Evaluation Unit (CHEAR), Department of Pediatrics, University of Michigan, Ann Arbor, Michigan 48109-0456; email: [email protected]
                                                                                                                                Annual Review of Public Health Vol. 28: 279 - 302
                                                                                                                                • Phosphatonins and the Regulation of Phosphate Homeostasis

                                                                                                                                  Theresa Berndt and Rajiv KumarNephrology and Hypertension Research, Departments of Medicine, Biochemistry, and Molecular Biology, Mayo Clinic College of Medicine, Rochester, Minnesota, 55905; email: [email protected]
                                                                                                                                  Annual Review of Physiology Vol. 69: 341 - 359
                                                                                                                                  • Regulation of Receptor Trafficking by GRKs and Arrestins

                                                                                                                                    Catherine A.C. Moore, Shawn K. Milano, and Jeffrey L. BenovicDepartment of Biochemistry and Molecular Biology, Thomas Jefferson University, Philadelphia, Pennsylvania 19107; email: [email protected], [email protected], [email protected]
                                                                                                                                    Annual Review of Physiology Vol. 69: 451 - 482
                                                                                                                                    • Specificity and Regulation of Renal Sulfate Transporters

                                                                                                                                      Daniel Markovich1 and Peter S. Aronson21Department of Physiology and Pharmacology, School of Biomedical Sciences, University of Queensland, Brisbane, QLD 4072 Australia; email: [email protected]2Department of Internal Medicine & Department of Cellular and Molecular Physiology, Yale University School of Medicine, New Haven, Connecticut 06520-8029; email: [email protected]
                                                                                                                                      Annual Review of Physiology Vol. 69: 361 - 375
                                                                                                                                      • Timing and Computation in Inner Retinal Circuitry

                                                                                                                                        Stephen A. BaccusDepartment of Neurobiology, Stanford University School of Medicine, Stanford, California 94305; email: [email protected]
                                                                                                                                        Annual Review of Physiology Vol. 69: 271 - 290
                                                                                                                                        • Timing and Computation in Inner Retinal Circuitry

                                                                                                                                          Stephen A. BaccusDepartment of Neurobiology, Stanford University School of Medicine, Stanford, California 94305; email: [email protected]
                                                                                                                                          Annual Review of Physiology Vol. 69: 271 - 290
                                                                                                                                          • Nuclear Receptor Structure: Implications for Function

                                                                                                                                            David L. Bain, Aaron F. Heneghan, Keith D. Connaghan-Jones, and Michael T. MiuraDepartment of Pharmaceutical Sciences, University of Colorado Health Sciences Center, Denver, Colorado 80262; email: [email protected], [email protected], [email protected], [email protected]
                                                                                                                                            Annual Review of Physiology Vol. 69: 201 - 220
                                                                                                                                            • Cytokine Therapy for Crohn's Disease: Advances in Translational Research

                                                                                                                                              Theresa T. Pizarro and Fabio CominelliDivision of Gastroenterology & Hepatology and the Digestive Health Center of Excellence, University of Virginia Health System, Charlottesville, Virginia 22908; email: [email protected], [email protected]
                                                                                                                                              Annual Review of Medicine Vol. 58: 433 - 444
                                                                                                                                              • The Drug Development Crisis: Efficiency and Safety

                                                                                                                                                C. Thomas CaskeyBrown Foundation Institute of Molecular Medicine for the Prevention of Human Diseases, The University of Texas Health Science Center at Houston, Houston, Texas 77030; email: [email protected]
                                                                                                                                                Annual Review of Medicine Vol. 58: 1 - 16
                                                                                                                                                • Intracellular Targets of Matrix Metalloproteinase-2 in Cardiac Disease: Rationale and Therapeutic Approaches

                                                                                                                                                  Richard SchulzCardiovascular Research Group, Departments of Pediatrics and Pharmacology, University of Alberta, Edmonton, Alberta, Canada; email: [email protected]
                                                                                                                                                  Annual Review of Pharmacology and Toxicology Vol. 47: 211 - 242
                                                                                                                                                  • Cardiac Resynchronization Treatment of Heart Failure

                                                                                                                                                    Ayesha Hasan and William T. AbrahamDivision of Cardiovascular Medicine, The Ohio State University College of Medicine, Columbus, Ohio 43210-1252; email: [email protected], [email protected]
                                                                                                                                                    Annual Review of Medicine Vol. 58: 63 - 74
                                                                                                                                                    • Cytokine Therapy for Crohn's Disease: Advances in Translational Research

                                                                                                                                                      Theresa T. Pizarro and Fabio CominelliDivision of Gastroenterology & Hepatology and the Digestive Health Center of Excellence, University of Virginia Health System, Charlottesville, Virginia 22908; email: [email protected], [email protected]
                                                                                                                                                      Annual Review of Medicine Vol. 58: 433 - 444
                                                                                                                                                      • The Drug Development Crisis: Efficiency and Safety

                                                                                                                                                        C. Thomas CaskeyBrown Foundation Institute of Molecular Medicine for the Prevention of Human Diseases, The University of Texas Health Science Center at Houston, Houston, Texas 77030; email: [email protected]
                                                                                                                                                        Annual Review of Medicine Vol. 58: 1 - 16
                                                                                                                                                        • Why Hasn't Eliminating Acute Rejection Improved Graft Survival?

                                                                                                                                                          JogiRaju Tantravahi,1,2 Karl L. Womer,1,2 and Bruce Kaplan31Division of Nephrology, Hypertension, and Renal Transplantation, University of Florida College of Medicine, Gainesville, Florida 32601-02242Malcom Randall VA Medical Center, Gainesville, Florida 326103University of Illinois Transplant Center, Department of Medicine, University of Illinois College of Medicine, Chicago, Illinois 60612-7315; email: [email protected]
                                                                                                                                                          Annual Review of Medicine Vol. 58: 369 - 385
                                                                                                                                                          • Mechanism-Based Pharmacokinetic-Pharmacodynamic Modeling: Biophase Distribution, Receptor Theory, and Dynamical Systems Analysis

                                                                                                                                                            Meindert Danhof,1,2 Joost de Jongh,1,2 Elizabeth C.M. De Lange,1 Oscar Della Pasqua,1,3 Bart A. Ploeger,1,2 and Rob A. Voskuyl1,41Leiden/Amsterdam Center for Drug Research, Division of Pharmacology, Leiden University, 2300 RA Leiden, The Netherlands; email: [email protected]2LAP & P Consultants BV, Archimedesweg 31, 2333 CM Leiden, The Netherlands3Clinical Pharmacology & Discovery Medicine, GlaxoSmithKline, Greenford, United Kingdom4Stichting Epilepsie Instellingen Nederland, Hoofddorp, The Netherlands
                                                                                                                                                            Annual Review of Pharmacology and Toxicology Vol. 47: 357 - 400
                                                                                                                                                            • Why Hasn't Eliminating Acute Rejection Improved Graft Survival?

                                                                                                                                                              JogiRaju Tantravahi,1,2 Karl L. Womer,1,2 and Bruce Kaplan31Division of Nephrology, Hypertension, and Renal Transplantation, University of Florida College of Medicine, Gainesville, Florida 32601-02242Malcom Randall VA Medical Center, Gainesville, Florida 326103University of Illinois Transplant Center, Department of Medicine, University of Illinois College of Medicine, Chicago, Illinois 60612-7315; email: [email protected]
                                                                                                                                                              Annual Review of Medicine Vol. 58: 369 - 385
                                                                                                                                                              • Mechanism-Based Pharmacokinetic-Pharmacodynamic Modeling: Biophase Distribution, Receptor Theory, and Dynamical Systems Analysis

                                                                                                                                                                Meindert Danhof,1,2 Joost de Jongh,1,2 Elizabeth C.M. De Lange,1 Oscar Della Pasqua,1,3 Bart A. Ploeger,1,2 and Rob A. Voskuyl1,41Leiden/Amsterdam Center for Drug Research, Division of Pharmacology, Leiden University, 2300 RA Leiden, The Netherlands; email: [email protected]2LAP & P Consultants BV, Archimedesweg 31, 2333 CM Leiden, The Netherlands3Clinical Pharmacology & Discovery Medicine, GlaxoSmithKline, Greenford, United Kingdom4Stichting Epilepsie Instellingen Nederland, Hoofddorp, The Netherlands
                                                                                                                                                                Annual Review of Pharmacology and Toxicology Vol. 47: 357 - 400
                                                                                                                                                                • Pharmacogenomic and Structural Analysis of Constitutive G Protein–Coupled Receptor Activity

                                                                                                                                                                  Martine J. Smit,1 Henry F. Vischer,1 Remko A. Bakker,1 Aldo Jongejan,1 Henk Timmerman,1 Leonardo Pardo,2 and Rob Leurs11Leiden/Amsterdam Center for Drug Research, Division of Medicinal Chemistry, Vrije Universiteit, Faculty of Sciences, Department of Chemistry, 1081 HV Amsterdam, The Netherlands; email: [email protected]2Laboratorio de Medicina Computacional, Unidad de Bioestadistica, Facultad de Medicina, Universidad Autonoma de Barcelona, Barcelona, Spain
                                                                                                                                                                  Annual Review of Pharmacology and Toxicology Vol. 47: 53 - 87
                                                                                                                                                                  • The Drug Development Crisis: Efficiency and Safety

                                                                                                                                                                    C. Thomas CaskeyBrown Foundation Institute of Molecular Medicine for the Prevention of Human Diseases, The University of Texas Health Science Center at Houston, Houston, Texas 77030; email: [email protected]
                                                                                                                                                                    Annual Review of Medicine Vol. 58: 1 - 16
                                                                                                                                                                    • Cellular Responses to DNA Damage: One Signal, Multiple Choices

                                                                                                                                                                      Tin Tin SuMolecular, Cellular and Developmental Biology, University of Colorado, Boulder, Colorado 80309-0347; email: [email protected]
                                                                                                                                                                      Annual Review of Genetics Vol. 40: 187 - 208
                                                                                                                                                                      • Genetic Analysis of Brain Circuits Underlying Pheromone Signaling

                                                                                                                                                                        C. Dulac1 and S. Wagner21Howard Hughes Medical Institute, Department of Molecular and Cellular Biology, Harvard University, Cambridge, Massachusetts 02138; email: [email protected]2Department of Neurobiology, Hebrew University, Jerusalem, Israel 91904; email: [email protected]
                                                                                                                                                                        Annual Review of Genetics Vol. 40: 449 - 467
                                                                                                                                                                        • Genetics of Egg-Laying in Worms

                                                                                                                                                                          William R. Schafer[Erratum]Department of Biology, University of California at San Diego, La Jolla, California 92093-0349 and MRC Laboratory of Molecular Biology, Cambridge CB2 2QH, United Kingdom; email: [email protected]
                                                                                                                                                                          Annual Review of Genetics Vol. 40: 487 - 509
                                                                                                                                                                          • Mechanisms of Cyclic-di-GMP Signaling in Bacteria

                                                                                                                                                                            Urs Jenal and Jacob MaloneBiozentrum of the University of Basel, CH-4056 Basel, Switzerland; email: [email protected]
                                                                                                                                                                            Annual Review of Genetics Vol. 40: 385 - 407
                                                                                                                                                                            • Genetic Analysis of Brain Circuits Underlying Pheromone Signaling

                                                                                                                                                                              C. Dulac1 and S. Wagner21Howard Hughes Medical Institute, Department of Molecular and Cellular Biology, Harvard University, Cambridge, Massachusetts 02138; email: [email protected]2Department of Neurobiology, Hebrew University, Jerusalem, Israel 91904; email: [email protected]
                                                                                                                                                                              Annual Review of Genetics Vol. 40: 449 - 467
                                                                                                                                                                              • Genetics of Egg-Laying in Worms

                                                                                                                                                                                William R. Schafer[Erratum]Department of Biology, University of California at San Diego, La Jolla, California 92093-0349 and MRC Laboratory of Molecular Biology, Cambridge CB2 2QH, United Kingdom; email: [email protected]
                                                                                                                                                                                Annual Review of Genetics Vol. 40: 487 - 509
                                                                                                                                                                                • Genetics of Egg-Laying in Worms

                                                                                                                                                                                  William R. Schafer[Erratum]Department of Biology, University of California at San Diego, La Jolla, California 92093-0349 and MRC Laboratory of Molecular Biology, Cambridge CB2 2QH, United Kingdom; email: [email protected]
                                                                                                                                                                                  Annual Review of Genetics Vol. 40: 487 - 509
                                                                                                                                                                                  • Genetics of Egg-Laying in Worms

                                                                                                                                                                                    William R. Schafer[Erratum]Department of Biology, University of California at San Diego, La Jolla, California 92093-0349 and MRC Laboratory of Molecular Biology, Cambridge CB2 2QH, United Kingdom; email: [email protected]
                                                                                                                                                                                    Annual Review of Genetics Vol. 40: 487 - 509
                                                                                                                                                                                    • Biodiversity Conservation Planning Tools: Present Status and Challenges for the Future

                                                                                                                                                                                      Sahotra Sarkar,1 Robert L. Pressey,2 Daniel P. Faith,3 Christopher R. Margules,4 Trevon Fuller,1 David M. Stoms,5 Alexander Moffett,1 Kerrie A. Wilson,2 Kristen J. Williams,4 Paul H. Williams,6 and Sandy Andelman71Biodiversity and Biocultural Conservation Laboratory, Section of Integrative Biology, University of Texas, Austin, Texas 78712; email: [email protected], [email protected], [email protected]2The Ecology Centre, The University of Queensland, St. Lucia, Queensland 4072, Australia; email: [email protected], [email protected]3The Australian Museum, Sydney, New South Wales 2010, Australia; email: [email protected]4Sustainable Ecosystems Division, Commonwealth Scientific and Industrial Research Organisation, St. Lucia, Queensland 4067, Australia; email: [email protected], [email protected]5Donald Bren School of Environmental Science and Management, University of California, Santa Barbara, California 93106; email: [email protected]6Biogeography and Conservation Laboratory, Department of Entomology, The Natural History Museum, London SW7 5BD, United Kingdom; email: [email protected]7Conservation International, Washington, District of Columbia 20036; email: [email protected]
                                                                                                                                                                                      Annual Review of Environment and Resources Vol. 31: 123 - 159
                                                                                                                                                                                      • Biodiversity Conservation Planning Tools: Present Status and Challenges for the Future

                                                                                                                                                                                        Sahotra Sarkar,1 Robert L. Pressey,2 Daniel P. Faith,3 Christopher R. Margules,4 Trevon Fuller,1 David M. Stoms,5 Alexander Moffett,1 Kerrie A. Wilson,2 Kristen J. Williams,4 Paul H. Williams,6 and Sandy Andelman71Biodiversity and Biocultural Conservation Laboratory, Section of Integrative Biology, University of Texas, Austin, Texas 78712; email: [email protected], [email protected], [email protected]2The Ecology Centre, The University of Queensland, St. Lucia, Queensland 4072, Australia; email: [email protected], [email protected]3The Australian Museum, Sydney, New South Wales 2010, Australia; email: [email protected]4Sustainable Ecosystems Division, Commonwealth Scientific and Industrial Research Organisation, St. Lucia, Queensland 4067, Australia; email: [email protected], [email protected]5Donald Bren School of Environmental Science and Management, University of California, Santa Barbara, California 93106; email: [email protected]6Biogeography and Conservation Laboratory, Department of Entomology, The Natural History Museum, London SW7 5BD, United Kingdom; email: [email protected]7Conservation International, Washington, District of Columbia 20036; email: [email protected]
                                                                                                                                                                                        Annual Review of Environment and Resources Vol. 31: 123 - 159
                                                                                                                                                                                        • Global Marine Biodiversity Trends

                                                                                                                                                                                          Enric Sala and Nancy KnowltonCenter for Marine Biodiversity and Conservation, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, California 92093-0202; email: [email protected], [email protected]
                                                                                                                                                                                          Annual Review of Environment and Resources Vol. 31: 93 - 122
                                                                                                                                                                                          • Water Markets and Trading

                                                                                                                                                                                            Howard Chong and David SundingDepartment of Agricultural and Resource Economics, University of California, Berkeley, California, 94720-3310; email: [email protected], [email protected]
                                                                                                                                                                                            Annual Review of Environment and Resources Vol. 31: 239 - 264
                                                                                                                                                                                            • Assessing the Vulnerability of Social-Environmental Systems

                                                                                                                                                                                              Hallie Eakin1 and Amy Lynd Luers21Department of Geography, University of California, Santa Barbara, California, 93106-4060; email: [email protected]2Global Environmental Program, Union of Concerned Scientists, Berkeley, California 94704-1567; email: [email protected]
                                                                                                                                                                                              Annual Review of Environment and Resources Vol. 31: 365 - 394
                                                                                                                                                                                              • Environment and Security

                                                                                                                                                                                                Sanjeev Khagram1 and Saleem Ali21Public Affairs and International Studies, University of Washington, Seattle, Washington 98195-3055; email: [email protected]2Rubenstein School of Environment and Natural Resources, University of Vermont, Burlington, Vermont 05401; email: [email protected]
                                                                                                                                                                                                Annual Review of Environment and Resources Vol. 31: 395 - 411
                                                                                                                                                                                                • Environment and Security

                                                                                                                                                                                                  Sanjeev Khagram1 and Saleem Ali21Public Affairs and International Studies, University of Washington, Seattle, Washington 98195-3055; email: [email protected]2Rubenstein School of Environment and Natural Resources, University of Vermont, Burlington, Vermont 05401; email: [email protected]
                                                                                                                                                                                                  Annual Review of Environment and Resources Vol. 31: 395 - 411
                                                                                                                                                                                                  • Biotechnology in Agriculture

                                                                                                                                                                                                    Robert W. HerdtApplied Economics and Management, Cornell University, Ithaca, New York 14853; email: [email protected]
                                                                                                                                                                                                    Annual Review of Environment and Resources Vol. 31: 265 - 295
                                                                                                                                                                                                    • Environment and Security

                                                                                                                                                                                                      Sanjeev Khagram1 and Saleem Ali21Public Affairs and International Studies, University of Washington, Seattle, Washington 98195-3055; email: [email protected]2Rubenstein School of Environment and Natural Resources, University of Vermont, Burlington, Vermont 05401; email: [email protected]
                                                                                                                                                                                                      Annual Review of Environment and Resources Vol. 31: 395 - 411
                                                                                                                                                                                                      • Physics of a Rare Isotope Accelerator

                                                                                                                                                                                                        D.F. Geesaman,1 C.K. Gelbke,2 R.V.F. Janssens,1 and B.M. Sherrill21Argonne National Laboratory, Argonne, Illinois 60439; e-mail: [email protected], [email protected]2National Superconducting Cyclotron Laboratory and Department of Physics, Michigan State University, East Lansing, Michigan 48824; e-mail: [email protected], [email protected]
                                                                                                                                                                                                        Annual Review of Nuclear and Particle Science Vol. 56: 53 - 92
                                                                                                                                                                                                        • Assessing the Vulnerability of Social-Environmental Systems

                                                                                                                                                                                                          Hallie Eakin1 and Amy Lynd Luers21Department of Geography, University of California, Santa Barbara, California, 93106-4060; email: [email protected]2Global Environmental Program, Union of Concerned Scientists, Berkeley, California 94704-1567; email: [email protected]
                                                                                                                                                                                                          Annual Review of Environment and Resources Vol. 31: 365 - 394
                                                                                                                                                                                                          • Energy Efficiency Policies: A Retrospective Examination

                                                                                                                                                                                                            Kenneth Gillingham,1,2 Richard Newell,1 and Karen Palmer11Resources for the Future, Washington, District of Columbia 20036; email: [email protected], [email protected]2Stanford University, Stanford, California 94309; email: [email protected]
                                                                                                                                                                                                            Annual Review of Environment and Resources Vol. 31: 161 - 192
                                                                                                                                                                                                            • Environmental Governance

                                                                                                                                                                                                              Maria Carmen Lemos and Arun AgrawalSchool of Natural Resources and Environment, University of Michigan, Ann Arbor, Michigan 48109; email: [email protected], [email protected]
                                                                                                                                                                                                              Annual Review of Environment and Resources Vol. 31: 297 - 325
                                                                                                                                                                                                              • Assessing the Vulnerability of Social-Environmental Systems

                                                                                                                                                                                                                Hallie Eakin1 and Amy Lynd Luers21Department of Geography, University of California, Santa Barbara, California, 93106-4060; email: [email protected]2Global Environmental Program, Union of Concerned Scientists, Berkeley, California 94704-1567; email: [email protected]
                                                                                                                                                                                                                Annual Review of Environment and Resources Vol. 31: 365 - 394
                                                                                                                                                                                                                • Understanding Microbial Metabolism

                                                                                                                                                                                                                  Diana M. DownsDepartment of Bacteriology, College of Agriculture and Life Sciences, University of Wisconsin-Madison, Madison, Wisconsin 53706; email: [email protected]
                                                                                                                                                                                                                  Annual Review of Microbiology Vol. 60: 533 - 559
                                                                                                                                                                                                                  • Francisella tularensis: Taxonomy, Genetics, and Immunopathogenesis of a Potential Agent of Biowarfare

                                                                                                                                                                                                                    Molly K. McLendon,1,2 Michael A. Apicella,1,2 and Lee-Ann H. Allen1,2,31Inflammation Program and the Departments of 2Microbiology and 3Internal Medicine, University of Iowa and the VA Medical Center, Iowa City, Iowa 52242; email: [email protected], [email protected], [email protected]
                                                                                                                                                                                                                    Annual Review of Microbiology Vol. 60: 167 - 185
                                                                                                                                                                                                                    • Virus Counterdefense: Diverse Strategies for Evading the RNA-Silencing Immunity

                                                                                                                                                                                                                      Feng Li1 and Shou-Wei Ding1,21Graduate Program for Microbiology, 2Department of Plant Pathology and Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, California 92521; email: [email protected]
                                                                                                                                                                                                                      Annual Review of Microbiology Vol. 60: 503 - 531
                                                                                                                                                                                                                      • Understanding Microbial Metabolism

                                                                                                                                                                                                                        Diana M. DownsDepartment of Bacteriology, College of Agriculture and Life Sciences, University of Wisconsin-Madison, Madison, Wisconsin 53706; email: [email protected]
                                                                                                                                                                                                                        Annual Review of Microbiology Vol. 60: 533 - 559
                                                                                                                                                                                                                        • Virus Counterdefense: Diverse Strategies for Evading the RNA-Silencing Immunity

                                                                                                                                                                                                                          Feng Li1 and Shou-Wei Ding1,21Graduate Program for Microbiology, 2Department of Plant Pathology and Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, California 92521; email: [email protected]
                                                                                                                                                                                                                          Annual Review of Microbiology Vol. 60: 503 - 531
                                                                                                                                                                                                                          • Origin of Mutations Under Selection: The Adaptive Mutation Controversy

                                                                                                                                                                                                                            John R. Roth,1 Elisabeth Kugelberg1 Andrew B. Reams1 Eric Kofoid1 and Dan I. Andersson21Microbiology Section, Division of Biological Sciences, University of California, Davis, California 95616; email: [email protected], [email protected], [email protected], [email protected]2Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala SE-751 23, Sweden; email: [email protected]
                                                                                                                                                                                                                            Annual Review of Microbiology Vol. 60: 477 - 501
                                                                                                                                                                                                                            • Origin of Mutations Under Selection: The Adaptive Mutation Controversy

                                                                                                                                                                                                                              John R. Roth,1 Elisabeth Kugelberg1 Andrew B. Reams1 Eric Kofoid1 and Dan I. Andersson21Microbiology Section, Division of Biological Sciences, University of California, Davis, California 95616; email: [email protected], [email protected], [email protected], [email protected]2Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala SE-751 23, Sweden; email: [email protected]
                                                                                                                                                                                                                              Annual Review of Microbiology Vol. 60: 477 - 501
                                                                                                                                                                                                                              • Understanding Microbial Metabolism

                                                                                                                                                                                                                                Diana M. DownsDepartment of Bacteriology, College of Agriculture and Life Sciences, University of Wisconsin-Madison, Madison, Wisconsin 53706; email: [email protected]
                                                                                                                                                                                                                                Annual Review of Microbiology Vol. 60: 533 - 559
                                                                                                                                                                                                                                • Virus Counterdefense: Diverse Strategies for Evading the RNA-Silencing Immunity

                                                                                                                                                                                                                                  Feng Li1 and Shou-Wei Ding1,21Graduate Program for Microbiology, 2Department of Plant Pathology and Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, California 92521; email: [email protected]
                                                                                                                                                                                                                                  Annual Review of Microbiology Vol. 60: 503 - 531
                                                                                                                                                                                                                                  • Origin of Mutations Under Selection: The Adaptive Mutation Controversy

                                                                                                                                                                                                                                    John R. Roth,1 Elisabeth Kugelberg1 Andrew B. Reams1 Eric Kofoid1 and Dan I. Andersson21Microbiology Section, Division of Biological Sciences, University of California, Davis, California 95616; email: [email protected], [email protected], [email protected], [email protected]2Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala SE-751 23, Sweden; email: [email protected]
                                                                                                                                                                                                                                    Annual Review of Microbiology Vol. 60: 477 - 501
                                                                                                                                                                                                                                    • Francisella tularensis: Taxonomy, Genetics, and Immunopathogenesis of a Potential Agent of Biowarfare

                                                                                                                                                                                                                                      Molly K. McLendon,1,2 Michael A. Apicella,1,2 and Lee-Ann H. Allen1,2,31Inflammation Program and the Departments of 2Microbiology and 3Internal Medicine, University of Iowa and the VA Medical Center, Iowa City, Iowa 52242; email: [email protected], [email protected], [email protected]
                                                                                                                                                                                                                                      Annual Review of Microbiology Vol. 60: 167 - 185
                                                                                                                                                                                                                                      • Virus-Vector Interactions Mediating Nonpersistent and Semipersistent Transmission of Plant Viruses

                                                                                                                                                                                                                                        James C. K. Ng1 and Bryce W. Falk21Department of Plant Pathology, University of California, Riverside, California 92521 and 2Department of Plant Pathology, University of California, Davis, California 95616; email: [email protected], [email protected]
                                                                                                                                                                                                                                        Annual Review of Phytopathology Vol. 44: 183 - 212
                                                                                                                                                                                                                                        • Genome-Wide Analysis of Protein-DNA Interactions

                                                                                                                                                                                                                                          Tae Hoon Kim1 and Bing Ren1,21Ludwig Institute for Cancer Research, 2Department of Cellular and Molecular Medicine, University of California, San Diego School of Medicine, La Jolla, California 92093-0653; email: [email protected], [email protected]
                                                                                                                                                                                                                                          Annual Review of Genomics and Human Genetics Vol. 7: 81 - 102
                                                                                                                                                                                                                                          • A 60-Year Tale of Spots, Maps, and Genes

                                                                                                                                                                                                                                            Victor A. McKusickInstitute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287-4922

                                                                                                                                                                                                                                            Annual Review of Genomics and Human Genetics Vol. 7: 1 - 27
                                                                                                                                                                                                                                            • A 60-Year Tale of Spots, Maps, and Genes

                                                                                                                                                                                                                                              Victor A. McKusickInstitute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287-4922

                                                                                                                                                                                                                                              Annual Review of Genomics and Human Genetics Vol. 7: 1 - 27
                                                                                                                                                                                                                                              • Mouse Chromosome Engineering for Modeling Human Disease

                                                                                                                                                                                                                                                Louise van der Weyden and Allan BradleyMouse Genomics Lab, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, United Kingdom; email: [email protected], [email protected]
                                                                                                                                                                                                                                                Annual Review of Genomics and Human Genetics Vol. 7: 247 - 276
                                                                                                                                                                                                                                                • Quantification and Modeling of Crop Losses: A Review of Purposes

                                                                                                                                                                                                                                                  Serge Savary,1 Paul S. Teng,2 Laetitia Willocquet,1 and Forrest W. Nutter, Jr.31INRA, UMR Santé Végétale, BP81, Villenave d'Ornon 33883, France; email: [email protected], [email protected]2Natural Science and Science Education, National Institute of Education, Nanyang Technological University, 637616 Singapore; email: [email protected]3Department of Plant Pathology, Iowa State University, Ames, Iowa 50011; email: [email protected]
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                                                                                                                                                                                                                                                                                                                  Lincoln, Nebraska 68583-0905
                                                                                                                                                                                                                                                                                                                  ; email: [email protected]; [email protected]2Seccion de Bacteriología, Corporacion para Investigaciones Biologicas (CIB),
                                                                                                                                                                                                                                                                                                                  Carrera 72A No. 78B 141, A.A. 7378, Medellín, Colombia
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                                                                                                                                                                                                                                                                                                                  Corvallis, Oregon 97331
                                                                                                                                                                                                                                                                                                                  ; email: [email protected]
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                                                                                                                                                                                                                                                                                                                        Andreas A. Linninger,1,2 Kevin Tangen,1 Chih-Yang Hsu,1 and David Frim31Laboratory for Product and Process Design, Department of Bioengineering, University of Illinois at Chicago, Chicago, Illinois 60607; email: [email protected]2Department of Neurosurgery, University of Illinois, Chicago, Illinois 606123Department of Neurosurgery, University of Chicago, Chicago, Illinois 60637
                                                                                                                                                                                                                                                                                                                        Annual Review of Fluid Mechanics Vol. 48: 219 - 257
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                                                                                                                                                                                                                                                                                                                      • Fluid Mechanics of Heart Valves and Their Replacements

                                                                                                                                                                                                                                                                                                                        Fotis Sotiropoulos,1,2, Trung Bao Le,2 and Anvar Gilmanov21Department of Civil, Environmental, and Geo-Engineering, University of Minnesota, Minneapolis, Minnesota 55455; email: [email protected]2Saint Anthony Falls Laboratory, College of Science and Engineering, University of Minnesota, Minneapolis, Minnesota 55414
                                                                                                                                                                                                                                                                                                                        Annual Review of Fluid Mechanics Vol. 48: 259 - 283
                                                                                                                                                                                                                                                                                                                        • ...but also introduces nonphysiological flow patterns in the ascending aorta (Hope et al. 2010), ...

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                                                                                                                                                                                                                                                                                                                      • Fluid Mechanics of Heart Valves and Their Replacements

                                                                                                                                                                                                                                                                                                                        Fotis Sotiropoulos,1,2, Trung Bao Le,2 and Anvar Gilmanov21Department of Civil, Environmental, and Geo-Engineering, University of Minnesota, Minneapolis, Minnesota 55455; email: [email protected]2Saint Anthony Falls Laboratory, College of Science and Engineering, University of Minnesota, Minneapolis, Minnesota 55414
                                                                                                                                                                                                                                                                                                                        Annual Review of Fluid Mechanics Vol. 48: 259 - 283
                                                                                                                                                                                                                                                                                                                        • ...the WSS patterns on the aortic wall may be significantly different than those in healthy subjects (Barker et al. 2010)....

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                                                                                                                                                                                                                                                                                                                      • Fluid Mechanics of Heart Valves and Their Replacements

                                                                                                                                                                                                                                                                                                                        Fotis Sotiropoulos,1,2, Trung Bao Le,2 and Anvar Gilmanov21Department of Civil, Environmental, and Geo-Engineering, University of Minnesota, Minneapolis, Minnesota 55455; email: [email protected]2Saint Anthony Falls Laboratory, College of Science and Engineering, University of Minnesota, Minneapolis, Minnesota 55414
                                                                                                                                                                                                                                                                                                                        Annual Review of Fluid Mechanics Vol. 48: 259 - 283
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                                                                                                                                                                                                                                                                                                                      • Hemodynamics of Cerebral Aneurysms: Connecting Medical Imaging and Biomechanical Analysis

                                                                                                                                                                                                                                                                                                                        Vitaliy L. Rayz1 and Aaron A. Cohen-Gadol2,31Weldon School of Biomedical Engineering and School of Mechanical Engineering, Purdue University, West Lafayette, Indiana 47907, USA; email: [email protected]2Department of Neurosurgery, Indiana University School of Medicine, Indianapolis, Indiana 46202, USA3Goodman Campbell Brain and Spine, Carmel, Indiana 46032, USA
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                                                                                                                                                                                                                                                                                                                      • Hemodynamics of Cerebral Aneurysms: Connecting Medical Imaging and Biomechanical Analysis

                                                                                                                                                                                                                                                                                                                        Vitaliy L. Rayz1 and Aaron A. Cohen-Gadol2,31Weldon School of Biomedical Engineering and School of Mechanical Engineering, Purdue University, West Lafayette, Indiana 47907, USA; email: [email protected]2Department of Neurosurgery, Indiana University School of Medicine, Indianapolis, Indiana 46202, USA3Goodman Campbell Brain and Spine, Carmel, Indiana 46032, USA
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                                                                                                                                                                                                                                                                                                                        • ...Recent studies demonstrated the capabilities of 4D flow MRI for capturing complex flow patterns in the major vessels of the CoW (62...
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                                                                                                                                                                                                                                                                                                                      • Hemodynamics of Cerebral Aneurysms: Connecting Medical Imaging and Biomechanical Analysis

                                                                                                                                                                                                                                                                                                                        Vitaliy L. Rayz1 and Aaron A. Cohen-Gadol2,31Weldon School of Biomedical Engineering and School of Mechanical Engineering, Purdue University, West Lafayette, Indiana 47907, USA; email: [email protected]2Department of Neurosurgery, Indiana University School of Medicine, Indianapolis, Indiana 46202, USA3Goodman Campbell Brain and Spine, Carmel, Indiana 46032, USA
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                                                                                                                                                                                                                                                                                                                      • Fluid Mechanics of Heart Valves and Their Replacements

                                                                                                                                                                                                                                                                                                                        Fotis Sotiropoulos,1,2, Trung Bao Le,2 and Anvar Gilmanov21Department of Civil, Environmental, and Geo-Engineering, University of Minnesota, Minneapolis, Minnesota 55455; email: [email protected]2Saint Anthony Falls Laboratory, College of Science and Engineering, University of Minnesota, Minneapolis, Minnesota 55414
                                                                                                                                                                                                                                                                                                                        Annual Review of Fluid Mechanics Vol. 48: 259 - 283
                                                                                                                                                                                                                                                                                                                        • ...our understanding of valvular hemodynamics in physiologic conditions has been revolutionized by the rapid advent of noninvasive imaging modalities (Markl et al. 2011, Carlsson et al. 2012, Sengupta et al. 2012), ...
                                                                                                                                                                                                                                                                                                                      • The Clinical Assessment of Intraventricular Flows

                                                                                                                                                                                                                                                                                                                        Javier Bermejo,1 Pablo Martínez-Legazpi,2 and Juan C. del Álamo2,31Department of Cardiology, Hospital General Universitario Gregorio Marañón, Universidad Complutense de Madrid, and Instituto de Investigación Sanitaria Gregorio Marañón, Madrid 28007, Spain; email: [email protected]2Department of Mechanical and Aerospace Engineering and3Institute for Engineering in Medicine, University of California San Diego, La Jolla, California 92093; email: [email protected]
                                                                                                                                                                                                                                                                                                                        Annual Review of Fluid Mechanics Vol. 47: 315 - 342
                                                                                                                                                                                                                                                                                                                        • ...it is important to consider that the total kinetic energy contained by blood in the LV is approximately 5 mJ during late filling (Carlsson et al. 2012), ...

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                                                                                                                                                                                                                                                                                                                      • Cardiovascular Magnetic Resonance: Deeper Insights Through Bioengineering

                                                                                                                                                                                                                                                                                                                        A.A. Young1 and J.L. Prince21Department of Anatomy with Radiology, School of Medical Science, Faculty of Medical and Health Sciences, University of Auckland, Auckland 1023, New Zealand; email: [email protected]2Department of Electrical and Computer Engineering, Center for Imaging Science, John Hopkins University, Baltimore, Maryland 21218
                                                                                                                                                                                                                                                                                                                        Annual Review of Biomedical Engineering Vol. 15: 433 - 461
                                                                                                                                                                                                                                                                                                                        • ...Figure 5 Velocity measurement using a bipolar gradient. (a) Velocity encoding using a bipolar gradient. (b) Three-dimensional time-resolved flow showing velocity at different points in the aorta (reprinted with permission from Reference 74)....
                                                                                                                                                                                                                                                                                                                        • ...a measure of aortic compliance (a marker of vascular disease). Click here to view a video showing four-dimensional (4D) flow animation (courtesy of Reference 74)....

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                                                                                                                                                                                                                                                                                                                      • Contemporary Application of Cardiovascular Magnetic Resonance Imaging

                                                                                                                                                                                                                                                                                                                        Yuchi Han,1 Yucheng Chen,2 and Victor A. Ferrari11Departments of Medicine (Cardiovascular Division) and Radiology, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA; email: [email protected]2Departments of Cardiology and Radiology, West China Hospital, Sichuan University, Chengdu, Sichuan, China
                                                                                                                                                                                                                                                                                                                        Annual Review of Medicine Vol. 71: 221 - 234
                                                                                                                                                                                                                                                                                                                        • ...Pulmonary vortex intervals obtained by 4D flow can indirectly assess pulmonary artery pressure and identify patients with PAH and borderline PAH (90)....

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                                                                                                                                                                                                                                                                                                                      • Fluid Mechanics of Heart Valves and Their Replacements

                                                                                                                                                                                                                                                                                                                        Fotis Sotiropoulos,1,2, Trung Bao Le,2 and Anvar Gilmanov21Department of Civil, Environmental, and Geo-Engineering, University of Minnesota, Minneapolis, Minnesota 55455; email: [email protected]2Saint Anthony Falls Laboratory, College of Science and Engineering, University of Minnesota, Minneapolis, Minnesota 55414
                                                                                                                                                                                                                                                                                                                        Annual Review of Fluid Mechanics Vol. 48: 259 - 283
                                                                                                                                                                                                                                                                                                                        • ...The large-scale flow structures induced by PHVs in the aortic position have also started to be observed in vivo in recent MRI studies (von Knobelsdorff-Brenkenhoff et al. 2014), ...
                                                                                                                                                                                                                                                                                                                        • .... Figure 6c underscores the aforementioned similarity between the AV and TPHV large-scale flow patterns (Bissell et al. 2014, von Knobelsdorff-Brenkenhoff et al. 2014)....
                                                                                                                                                                                                                                                                                                                        • ...In vivo studies have revealed marked differences in the ascending aorta hemodynamics between a BMHV and a TPHV when implanted in the aortic position (von Knobelsdorff-Brenkenhoff et al. 2014)....
                                                                                                                                                                                                                                                                                                                        • ...and such evaluations provide significant new insights into the effect of PHV implants on intraventricular flow (von Knobelsdorff-Brenkenhoff et al. 2014)....

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                                                                                                                                                                                                                                                                                                                      • The Clinical Assessment of Intraventricular Flows

                                                                                                                                                                                                                                                                                                                        Javier Bermejo,1 Pablo Martínez-Legazpi,2 and Juan C. del Álamo2,31Department of Cardiology, Hospital General Universitario Gregorio Marañón, Universidad Complutense de Madrid, and Instituto de Investigación Sanitaria Gregorio Marañón, Madrid 28007, Spain; email: [email protected]2Department of Mechanical and Aerospace Engineering and3Institute for Engineering in Medicine, University of California San Diego, La Jolla, California 92093; email: [email protected]
                                                                                                                                                                                                                                                                                                                        Annual Review of Fluid Mechanics Vol. 47: 315 - 342
                                                                                                                                                                                                                                                                                                                        • ...and that blood transport can be significantly altered in cardiomyopathies (Eriksson et al. 2013, Hendabadi et al. 2013a)....
                                                                                                                                                                                                                                                                                                                        • ...it has allowed the description of how these patterns are altered in diseased hearts (Bolger et al. 2007; Eriksson et al. 2010, 2011, 2013...
                                                                                                                                                                                                                                                                                                                        • ...both the relative volume of these compartments and their kinetic energy can be used to assess the efficiency of ventricular flow in coupling filling and ejection (Bolger et al. 2007; Eriksson et al. 2010, 2011, 2013...
                                                                                                                                                                                                                                                                                                                        • ...HF patients experience higher losses of kinetic energy during diastole than do healthy subjects (Bolger et al. 2007, Eriksson et al. 2013, Fredriksson et al. 2011), ...
                                                                                                                                                                                                                                                                                                                        • ...Both echocardiographic and PC-MRI studies point out that between 68% and 71% of the blood volume entering the normal LV is direct flow that exits during the same beat (Eriksson et al. 2011, 2013...
                                                                                                                                                                                                                                                                                                                        • ...The few existing analyses of blood transport in diseased hearts focus on patients with DCM (Eriksson et al. 2013, Hendabadi et al. 2013a)....
                                                                                                                                                                                                                                                                                                                        • ...the extent of the residual volume also experiences a moderate increase (Figure 5c) (Eriksson et al. 2013)....

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                                                                                                                                                                                                                                                                                                                    More AR articles citing this reference

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                                                                                                                                                                                                                                                                                                                    • Table 1  -Potential sources of errors in 4D flow MRI: types, consequences, and proposed mitigation strategies
                                                                                                                                                                                                                                                                                                                    • Table 2  -Advanced 4D flow MRI hemodynamic metrics
                                                                                                                                                                                                                                                                                                                    • Table 3  -Overview of applications of 4D flow–derived hemodynamic parameters
                                                                                                                                                                                                                                                                                                                    • Figures
                                                                                                                                                                                                                                                                                                                    • Tables
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                                                                                                                                                                                                                                                                                                                    Figure 1  Data acquisition and imaging acceleration strategies used in 4D flow MRI. (a) Synchronization of 4D flow MRI data acquisition with cardiac motion and patient's breathing by ECG and respiratory gating. For each cardiac time frame, reference data and three velocity-sensitive scans are acquired to reconstruct four volumetric data sets. (b) Anatomic magnitude data and three data sets with blood flow velocities encoding along the Vx, Vy, and Vz directions. (c) 4D flow data can be acquired using different segmented kx–ky-space sampling strategies: standard Cartesian (two k-space lines collected for each cardiac cycle), radial, or spiral. (d) k-space undersampling techniques for 4D flow imaging acceleration. Each technique can be applied to the three sampling patterns in panel c. For standard parallel imaging (e.g., generalized autocalibrating partially parallel acquisition, or GRAPPA, and sensitivity encoding, or SENSE), the k-space center is fully sampled and the typically achievable acceleration factor is on the order of R = 2 to 3. k-t acceleration is based on sparse sampling along both the spatial and temporal dimensions, which results in higher acceleration factors, on the order of R = 4 to 8. 3D data are displayed for the kz–ky space; sampling along the temporal dimension is represented by the small graphs (green and black dots represent acquired lines). Compressed sensing is based on randomly undersampled k-space data, and the image is reconstructed using iterative techniques.

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                                                                                                                                                                                                                                                                                                                    ...As shown in Figure 1a, three-directional velocity measurements can be efficiently achieved by using interleaved four-point velocity encoding (Venc), ...

                                                                                                                                                                                                                                                                                                                    ...four time-resolved 3D data sets are generated (these are magnitude data depicting anatomy and three flow data sets representing the velocities Vx, Vy, and Vz) (Figure 1b)....

                                                                                                                                                                                                                                                                                                                    ...including 4D flow, allowing a two- or threefold acceleration (Figure 1d)....

                                                                                                                                                                                                                                                                                                                    ...and circular Cartesian undersampling (known as CIRCUS) (15) have allowed for even greater imaging acceleration factors (Figure 1d)....

                                                                                                                                                                                                                                                                                                                    ...An illustration of acceleration techniques is provided in Figure 1c,d....

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                                                                                                                                                                                                                                                                                                                    Figure 2  4D flow–based visualization of aortic hemodynamics. Example of systolic 3D streamlines, 3D wall shear stress, pressure mapping, viscous energy loss, and pulse wave velocity for a healthy aorta, all in sagittal oblique views. Abbreviations: AAo, ascending aorta; DAo, descending aorta.

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                                                                                                                                                                                                                                                                                                                    ...Color-coding by velocity magnitude facilitates the visual identification of regions with high systolic flow velocities (Figure 2). ...

                                                                                                                                                                                                                                                                                                                    ...Some of these advanced metrics have become available in commercial software (an example of 4D flow advanced post-processing in a healthy thoracic aorta is shown in Figure 2), ...

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                                                                                                                                                                                                                                                                                                                    Figure 3  Example of 4D flow MRI analysis in different vascular regions. (a) 3D path line visualization in a 14-year-old male patient with a univentricular heart treated by Fontan surgery showing flow originating from the superior vena cava (SVC; blue) and the inferior vena cava (IVC) through an extracardiac conduit (yellow). The path lines show the relative distribution of vena cava flow in the right pulmonary artery (RPA) and left pulmonary artery (LPA). (b) Mapping of systolic velocity maximum intensity projection (MIP) and viscous energy loss (EL) in a 79-year-old man with aortic valve stenosis, showing a maximal velocity of 4.8 m/s and a net energy loss of 55 mW. (c) Flow stasis map in a dilated left atrium (LA) (210 ml maximum volume) in a patient with atrial fibrillation, with a mean stasis of 63 ± 19%. (d) 3D streamlines depicting liver hemodynamics and portal flow in a case of portal hypertension in a 58-year-old woman (RPV refers to the right portal vein and LPV to the left portal vein).

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                                                                                                                                                                                                                                                                                                                    ...An overview of standard and advanced post-processing applications is provided in Table 3 and examples are shown in Figure 3....

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                                                                                                                                                                                                                                                                                                                    Figure 4  Aortic 4D flow MRI in bicuspid aortic valve (BAV)–related aortopathy. Wall shear stress (WSS) heat map and 3D streamline blood flow visualization in two patients with different right-to-left coronary cusp and right-to-noncoronary cusp aortic valve fusion phenotypes. (Top) BAV patients with right-to-left leaflet (left) and right-to-noncoronary (right) aortic valve leaflet fusion morphology. 3D streamlines at peak systole show distinct, eccentric flow jet patterns for each BAV function phenotype. (Bottom) 3D WSS heat maps: Red indicates regions of high WSS; blue indicates low WSS; and gray indicates normal WSS (N WSS) as compared with a healthy age- and sex-matched control cohort.

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                                                                                                                                                                                                                                                                                                                    ...while right-to-noncoronary cusp fusion was associated with elevated WSS in the right posterior wall and aortic arch dilatation (Figure 4)....

                                                                                                                                                                                                                                                                                                                    ...This method was successfully applied to BAV patients to create WSS heat maps showing areas of increased or decreased WSS (i.e., occurring outside 95% of normal values) (59, 60) (Figure 4)....

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                                                                                                                                                                                                                                                                                                                    Figure 5  Intracranial 4D flow in arteriovenous malformation (AVM), intracranial artery stenosis, and aneurysm. (a) Spetzler–Martin grade 3 left frontal AVM in a 51-year-old male. (Top) 3D streamlines and (bottom) flow distribution network graph. (b) Images from a 76-year-old female with severe right intracranial carotid artery (ICA) stenosis (white arrow), displayed as (top) a velocity maximum intensity projection on coronal view and (bottom) axial view. Note that the maximum velocity is not seen due to a lack of temporospatial resolution even with an isotropic resolution of 1 mm3. (c) Image from a 68-year-old female with a small irregular aneurysm (6 × 4 × 11 mm) with a 6-mm neck at V4 of the left vertebral artery: (top) streamlines and (bottom) wall shear stress.

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                                                                                                                                                                                                                                                                                                                    ...Emerging applications include the hemodynamic evaluation of intracranial aneurysms, arteriovenous malformations (AVMs), and intracranial atherosclerotic disease (Figure 5)....

                                                                                                                                                                                                                                                                                                                    ...particularly proximal or distal to stenosed vessels. 4D flow can be useful to estimate intracranial artery stenosis and its impact on cerebrovascular hemodynamics (Figure 5)....

                                                                                                                                                                                                                                                                                                                    ...4D flow studies have demonstrated the feasibility of computing WSS in intracranial aneurysms in comparisons with CFD (87–89) (Figure 5)....

                                                                                                                                                                                                                                                                                                                    ...a systematic quantitative analysis based on a flow network graph has recently been introduced (93) (Figure 5)....

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                                                                                                                                                                                                                                                                                                                    • Tables

                                                                                                                                                                                                                                                                                                                    Table 1  Potential sources of errors in 4D flow MRI: types, consequences, and proposed mitigation strategies

                                                                                                                                                                                                                                                                                                                    Source of errorType of errorConsequencesMitigation strategy
                                                                                                                                                                                                                                                                                                                    Acquisition relatedBackground phase offsetInaccurate velocities and flowUse stationary flow fit
                                                                                                                                                                                                                                                                                                                     Low spatial and/or temporal resolutionUnderestimation of peak flow and other quantitative parametersAdapt to the region of interest, with at least 5–6 voxels across the vessel diameter
                                                                                                                                                                                                                                                                                                                     Inadequate VencAliasing or low SNR or VNRSet Venc to 90% of expected velocity and use unaliasing post-processing
                                                                                                                                                                                                                                                                                                                     Inadequate FOVToo big: acquisition time too long, resolution too lowToo small: region of interest not covered, spatial aliasingCover region of interest
                                                                                                                                                                                                                                                                                                                     Acceleration parameters too highLow SNR, blurring, spatial artifacts, underestimation of velocitiesAdapt parameter to sampling technique, magnetic field, coils, contrast
                                                                                                                                                                                                                                                                                                                     Intravoxel dephasing due to turbulenceUnderestimation of velocitiesIncrease spatial resolution, reduce echo time
                                                                                                                                                                                                                                                                                                                    Patient relatedHeart rate variabilityBlurUse arrhythmia rejection algorithm, prospective gating
                                                                                                                                                                                                                                                                                                                     Respiratory motionRespiration artifacts (ghosting, streaks, blurring)Use respiratory gating, soft gating, averaging
                                                                                                                                                                                                                                                                                                                     Other motionBlurWork with the patient; use a shorter scan time
                                                                                                                                                                                                                                                                                                                     OverweightLow SNRUse contrast
                                                                                                                                                                                                                                                                                                                    Processing relatedInadequate volumetric segmentationLoss of measurement accuracyComplete a visual check; provide training
                                                                                                                                                                                                                                                                                                                     2D retrospective slice placement non-orthogonal to flowUnderestimation of velocities and flowUse automated placement or a dedicated tool; provide training
                                                                                                                                                                                                                                                                                                                     Inter- and intraobserver variabilityReproducibilityUse automated segmentation; provide training to observer

                                                                                                                                                                                                                                                                                                                    Abbreviations: FOV, field of view; SNR, signal-to-noise ratio; Venc, velocity encoding; VNR, velocity-to-noise ratio.

                                                                                                                                                                                                                                                                                                                    Table 2  Advanced 4D flow MRI hemodynamic metrics

                                                                                                                                                                                                                                                                                                                    MetricEquationDescription
                                                                                                                                                                                                                                                                                                                    Vorticity (ω)imageBeyond visualization of flow helix using streamlines; a quantitative approach is feasible using these parameters (95–97)
                                                                                                                                                                                                                                                                                                                    Helicityimage 
                                                                                                                                                                                                                                                                                                                    Wall shear stress vectors (image)imageWSS is the blood shear rate near the vessel wall, which is implicated in endothelial changes and vascular remodeling.In 4D flow MRI, WSS can be calculated from 2D analysis planes that are perpendicular to the vessel lumen (30, 98) or, as more recently demonstrated, with 3D techniques (99–101). The oscillatory shear index is the degree of WSS inversion over the cardiac cycle. An inherent limitation of 4D flow–based WSS quantification is related to underestimation due to the relatively low spatial and temporal resolutions of 4D flow MRI compared with numerical simulations (102). Nonetheless, information about WSS distribution and relative changes have been shown to be reproducible if the 4D flow data acquisition protocol is consistent (103, 104).
                                                                                                                                                                                                                                                                                                                    Kinetic energyimageThis equation for blood KE is derived from the Newtonian kinetic energy formula. The direction of the velocity is not considered in the calculation of blood KE (105).
                                                                                                                                                                                                                                                                                                                    Turbulent kinetic energyimageTKE provides a direction-independent measure of flow turbulence intensity that is based on rapid velocity fluctuations within an individual imaging voxel (106).
                                                                                                                                                                                                                                                                                                                    Viscous energy loss from viscous dissipation (imageimage,where image for i = j and image for image.
                                                                                                                                                                                                                                                                                                                    image
                                                                                                                                                                                                                                                                                                                    Viscous energy uses the concept of viscous dissipation and is based on a reformulation of the viscous portion of the Navier–Stokes energy equations (107).
                                                                                                                                                                                                                                                                                                                    Pressure dropimageΔPsimplified Bernoulli = 4v2Pressure drop is a widely used clinical parameter to assess the severity of a stenosis, typically based on the simplified Bernoulli equation. In 4D flow, this concept can be expanded by taking advantage of the volumetric data set to improve estimation of the pressure drop: The extended Bernoulli equation is used to account for pressure recovery in valvular stenosis (108, 109), while the general Bernoulli equation increases the precision of pressure drop estimation (110).
                                                                                                                                                                                                                                                                                                                    Pressure mappingimageBy assuming blood to be an incompressible laminar Newtonian fluid, pressure gradients can be calculated using the Navier–Stokes equations and displayed as 4D pressure difference maps. However, applications are challenging in cases of turbulent stenotic flow (73, 75).
                                                                                                                                                                                                                                                                                                                    Blood stasisimageSeveral methods have been proposed to quantify blood stasis based on volumetric residence time or analysis of distance traveled, following the path of a virtual particle (111) or based on low-velocity analysis in a voxel through time, with threshold values depending on the anatomic region, as in the equation proposed here (112).
                                                                                                                                                                                                                                                                                                                    Pulse wave velocityimagePWV is a marker of arterial stiffness independent of blood velocities. PWV quantification requires high temporal resolution (113, 114). Changes in the method used to estimate the time shift (Δt) may induce changes in the absolute value of PWV (114).

                                                                                                                                                                                                                                                                                                                    Abbreviations: image, the distance traveled by the wave; EL, viscous energy loss; g, gravitational force; KE, kinetic energy; μ, blood viscosity (3.2 × 10−3 Pa); image, inward normal vector; nstasis, the number of cardiac time frames in the cardiac cycle below a velocity threshold (e.g., 0.1 m/s); PWV, pulse wave velocity; image, blood density (assumed to be image); σi, velocity fluctuation intensity in three mutually perpendicular directions, i; TKE, turbulent kinetic energy; V, voxel volume; vt, velocity magnitude for each voxel at each cardiac time frame; WSS, wall shear stress.

                                                                                                                                                                                                                                                                                                                    Table 3  Overview of applications of 4D flow–derived hemodynamic parameters

                                                                                                                                                                                                                                                                                                                    Anatomic regionDiseaseParametersReferences
                                                                                                                                                                                                                                                                                                                    Great vessels
                                                                                                                                                                                                                                                                                                                    AortaBicuspid-related aortopathyFV, vorticity quantification, WSS, PWV45, 61, 69, 96
                                                                                                                                                                                                                                                                                                                     Marfan diseaseFV, WSS, PWV64, 65, 69
                                                                                                                                                                                                                                                                                                                     Aneurysm or dilatation (thoracic or abdominal)FQ, helicity quantification, EL, WSS, PWV, stasis69, 107, 111, 115–117
                                                                                                                                                                                                                                                                                                                     DissectionFV, FQ70, 71
                                                                                                                                                                                                                                                                                                                     CoarctationFV, pressure mapping, WSS72, 75
                                                                                                                                                                                                                                                                                                                     Atherosclerosis, vascular ageingFQ, WSS, TKE, PWV, pressure mapping118–121
                                                                                                                                                                                                                                                                                                                     Material-related changes (graft, TEVAR)FV, FQ, WSS76, 82, 117
                                                                                                                                                                                                                                                                                                                    Pulmonary arteryPulmonary hypertensionFQ, vorticity quantification, WSS, KE, EL122–124
                                                                                                                                                                                                                                                                                                                    Cardiac
                                                                                                                                                                                                                                                                                                                    Congenital heartUniventricular heart treated by Fontan procedureFV, FQ, KE, EL125–127
                                                                                                                                                                                                                                                                                                                     Tetralogy of FallotFV, FQ, vorticity quantification, KE, TKE, pressure drop110, 128–130
                                                                                                                                                                                                                                                                                                                     TGA treated by ASOFV, FQ, pressure drop110, 131
                                                                                                                                                                                                                                                                                                                     Atrial or septal defectsFV, FQ132, 133
                                                                                                                                                                                                                                                                                                                    ValvesAortic stenosisFQ, TKE, viscous energy loss, pressure drop, WSS44, 106, 107, 134
                                                                                                                                                                                                                                                                                                                     Aortic regurgitationFV135
                                                                                                                                                                                                                                                                                                                     Mitral valve regurgitationFV, FQ136, 137
                                                                                                                                                                                                                                                                                                                     Changes resulting from a valvular prosthesisFV, WSS138
                                                                                                                                                                                                                                                                                                                    VentriclesHeart failureFV, FQ, KE, TKE139, 140
                                                                                                                                                                                                                                                                                                                     HCMFV, FQ, pressure drop, energy loss141, 142
                                                                                                                                                                                                                                                                                                                    Atria and appendagesAtrial fibrillationFV, FQ, stasis112, 143
                                                                                                                                                                                                                                                                                                                    Small vessels
                                                                                                                                                                                                                                                                                                                    IntracranialAneurysmFV, FQ, vorticity, WSS90
                                                                                                                                                                                                                                                                                                                     StenosisFV, FQ, pressure drop84, 85
                                                                                                                                                                                                                                                                                                                     MalformationFV, FQ, pressure mapping92, 93, 144
                                                                                                                                                                                                                                                                                                                    CarotidStenosisFQ, WSS145, 146
                                                                                                                                                                                                                                                                                                                     AtherosclerosisPWV, WSS147, 148
                                                                                                                                                                                                                                                                                                                    AbdominalPortal hypertensionFV, FQ39
                                                                                                                                                                                                                                                                                                                     Mesenteric stenosisFQ, WSS149
                                                                                                                                                                                                                                                                                                                    Peripheral arteriesStenosisFQ, WSS150

                                                                                                                                                                                                                                                                                                                    Abbreviations: ASO, arterial switch operation; EL, energy loss; FV, flow visualization including velocity maximum intensity projections, streamlines, and path lines to observed leakage, as well as helicity and disturbed flow; FQ, flow quantification including peak velocities, net flow, forward flow, and backward flow; HCM, hypertrophic cardiomyopathy; KE, kinetic energy; PWV, pulse wave velocity; TEVAR, thoracic endovascular aortic repair; TGA, transposition of great arteries; TKE, turbulent kinetic energy; WSS, wall shear stress.

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                                                                                                                                                                                                                                                                                                                    Abstract

                                                                                                                                                                                                                                                                                                                    The host-to-host transmission of respiratory infectious diseases is fundamentally enabled by the interaction of pathogens with a variety of fluids (gas or liquid) that shape pathogen encapsulation and emission, transport and persistence in the environment,...Read More

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                                                                                                                                                                                                                                                                                                                    Figure 1: Core ideas about germ theory and transmission and their implications for epidemiology and public health, stemming from the legacy of Pasteur, Koch, Snow (not shown), Flügge, and Wells, estab...

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                                                                                                                                                                                                                                                                                                                    Figure 2: The isolated respiratory drop emission paradigm, which remains the foundation of current infection control guidelines: the dichotomy between isolated small- and large-droplet respiratory emi...

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                                                                                                                                                                                                                                                                                                                    Figure 3: (a) Paradigm shift from Wells's isolated droplet picture to that of the high-momentum turbulent (high-Re) multiphase exhalation cloud that carries droplets much further than if they were emi...

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                                                                                                                                                                                                                                                                                                                    Figure 4: (a) Exhaled air with initial volume V0 and momentum I0 containing mucosalivary droplets of a given size distribution forms the multiphase cloud of initial density ρc(0) and initial buoyancy ...

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                                                                                                                                                                                                                                                                                                                    Figure 5: Integrated PASS infection control management. (a) Masks reduce the forward momentum of the turbulent gas cloud and its droplet payload, though poor seals allow the gas cloud to follow the pa...

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                                                                                                                                                                                                                                                                                                                    Figure 6: (a) Droplet size distributions from the literature (69–93) comparing respiratory emissions under a range of conditions; measured with different instrumentation and at different distances fro...

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                                                                                                                                                                                                                                                                                                                    Figure 7: Compilation of results from the literature on quantification of droplet concentrations in a range of respiratory emissions from both infected and healthy subjects, showing a wide range of va...

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                                                                                                                                                                                                                                                                                                                    Figure 8: (a) Sequence of emission of mucosalivary fluid (MS) from the respiratory tract (RT) during violent exhalations. The bulk of MS transforms into sheets that pierce with fluid retraction into l...


                                                                                                                                                                                                                                                                                                                    Neural Stimulation and Recording Electrodes

                                                                                                                                                                                                                                                                                                                    Stuart F. Cogan
                                                                                                                                                                                                                                                                                                                    Vol. 10, 2008

                                                                                                                                                                                                                                                                                                                    Abstract - FiguresPreview

                                                                                                                                                                                                                                                                                                                    Abstract

                                                                                                                                                                                                                                                                                                                    Electrical stimulation of nerve tissue and recording of neural electrical activity are the basis of emerging prostheses and treatments for spinal cord injury, stroke, sensory deficits, and neurological disorders. An understanding of the electrochemical ...Read More

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                                                                                                                                                                                                                                                                                                                    Figure 1: Typical charge-balanced, current waveforms used in neural stimulation. The parameters vary widely depending on the application and size of the electrode. Waveform parameters usually falling ...

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                                                                                                                                                                                                                                                                                                                    Figure 2: Capacitive (TiN), three-dimensional faradaic (iridium oxide), and pseudocapacitive (Pt) charge-injection mechanisms.

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                                                                                                                                                                                                                                                                                                                    Figure 3: Scanning electron micrograph of the porous surface of sputtered TiN that gives rise to a high ESA/GSA ratio.

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                                                                                                                                                                                                                                                                                                                    Figure 4: Schematic view of a pore cross-section showing the pore resistance (R1‥R3) and double-layer capacitance (C1‥C3) elements that give rise to a delay-line and time-constant for accessing all th...

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                                                                                                                                                                                                                                                                                                                    Figure 5: An AIROF microelectrode for intracortical stimulation and recording.

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                                                                                                                                                                                                                                                                                                                    Figure 6: A CV of AIROF in phosphate buffered saline (PBS) at 50 mV s−1. The time integral of the negative current, shown by the blue region of the voltammogram, represents a CSCc of 23 mC cm−2.

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                                                                                                                                                                                                                                                                                                                    Figure 7: Comparison of cyclic voltammograms of platinum, SIROF, and smooth TiN macroelectrodes (GSA = 1.4 cm2) in PBS at a sweep rate of 20 mV s−1. 1, 2 indicate Pt oxidation and reduction; 3, 4 indi...

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                                                                                                                                                                                                                                                                                                                    Figure 8: A comparison of the difference in response of 50 mV s−1 and 50,000 mV s−1 CVs of an AIROF microelectrode implanted in cat cortex within one day following implantation and six weeks after imp...

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                                                                                                                                                                                                                                                                                                                    Figure 9: Impedance of an AIROF microelectrode (GSA = 940 μm2) in three electrolytes of different ionic conductivities but fixed phosphate buffer concentration. The conductivities are determined by th...

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                                                                                                                                                                                                                                                                                                                    Figure 10: Impedance of an AIROF microelectrode (same as Figure 9) in PBS and unbuffered saline of similar ionic conductivities. The low-frequency charge-transfer impedance increases with decreasing b...

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                                                                                                                                                                                                                                                                                                                    Figure 11: Comparison of the impedance of a smooth and porous TiN film demonstrating the reduction in impedance realized with a highly porous electrode coatings.

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                                                                                                                                                                                                                                                                                                                    Figure 12: Impedance of SIROF coatings on PtIr macroelectrodes as a function of thickness.

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                                                                                                                                                                                                                                                                                                                    Figure 13: A voltage transient of an AIROF microelectrode in response to a biphasic, symmetric (ic = ia) current pulse.

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                                                                                                                                                                                                                                                                                                                    Figure 14: Comparison of voltage transients of an AIROF microelectrode pulsed at 48 nC phase−1 at pulsewidths from 0.1–0.5 ms.

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                                                                                                                                                                                                                                                                                                                    Figure 15: Comparison of the initial and final Va for an AIROF microelectrode showing the large Va at the end of the current pulse when the AIROF is reduced.

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                                                                                                                                                                                                                                                                                                                    Figure 16: Charge-injection capacity as a function of electrode area. The importance of nonuniform current distributions and transport limitations in determining Qinj are reflected in the area depende...

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                                                                                                                                                                                                                                                                                                                    Figure 17: Comparison of in vivo and in vitro voltage transients of an AIROF electrode pulsed in an inorganic model of interstitial fluid (model-ISF) and subretinally in rabbit.

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                                                                                                                                                                                                                                                                                                                    Figure 18: Comparison of the CV response of an AIROF electrode in PBS, model-ISF, and subretinally in rabbit.

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                                                                                                                                                                                                                                                                                                                    Figure 19: Comparison of the impedance magnitude of an AIROF electrode in model-ISF and subretinally in rabbit.


                                                                                                                                                                                                                                                                                                                    Glutaminolysis: A Hallmark of Cancer Metabolism

                                                                                                                                                                                                                                                                                                                    Lifeng Yang, Sriram Venneti, Deepak Nagrath
                                                                                                                                                                                                                                                                                                                    Vol. 19, 2017

                                                                                                                                                                                                                                                                                                                    Abstract - FiguresPreview

                                                                                                                                                                                                                                                                                                                    Abstract

                                                                                                                                                                                                                                                                                                                    Glutamine is the most abundant circulating amino acid in blood and muscle and is critical for many fundamental cell functions in cancer cells, including synthesis of metabolites that maintain mitochondrial metabolism; generation of antioxidants to remove ...Read More

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                                                                                                                                                                                                                                                                                                                    Figure 1: Amino acid metabolic pathways in cancer cells. This detailed schematic depicts the involvement of essential amino acids and nonessential amino acids in protein synthesis, central carbon meta...

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                                                                                                                                                                                                                                                                                                                    Figure 2: Glutamine anaplerosis into the TCA cycle. Glutamine is taken up via ASCT2 (SLC1A5) and is converted into glutamate. Glutamate is metabolized to α-KG through the action of either GLUD or tran...

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                                                                                                                                                                                                                                                                                                                    Figure 3: Oncogenic signaling, tumor suppressor, and tumor microenvironment effects on glutamine metabolism. Expression levels of enzymes involved in the glutaminolysis pathway are regulated by intrin...

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                                                                                                                                                                                                                                                                                                                    Figure 4: Glutamine provides carbon and nitrogen sources for cells. (a) Glutamine donates amide and amino nitrogens for purine, nonessential amino acid, and glucosamine synthesis. The green rectangles...

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                                                                                                                                                                                                                                                                                                                    Figure 5: Metabolic pathways control NADPH and ROS balance. Glucose enters the pentose phosphate pathway to generate two NADPH molecules via G6PD and 6PGDH. Serine derived from 3-phosphate glycerate o...

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                                                                                                                                                                                                                                                                                                                    Figure 6: Roles of glutamine in tumor proliferation. Glutamine is taken up by cells via ASCT2 (SLC1A5) and is exported out of the cytoplasm by SLC7A5 to enable uptake of leucine. Leucine binds to Sest...

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                                                                                                                                                                                                                                                                                                                    Figure 7: Roles of glutamine in the regulation of tumor metastasis, apoptosis, and epigenetics. (a) ROS activate cytochrome c release from mitochondria, which in turn trigger the caspase apoptotic pat...

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                                                                                                                                                                                                                                                                                                                    Figure 8: Multiple sources maintain intracellular glutamine levels in cancer cells. (a) Cancer cells can generate glutamine through glutamine anabolism. De novo glutamine synthesis is mediated by the ...

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                                                                                                                                                                                                                                                                                                                    Figure 9: 18F-glutamine uptake, positron emission tomography (PET) imaging, and SLC1A5 expression in several cancer. (a) 18F-glutamine uptake is mediated mainly by the glutamine transporter SCL1A5 in ...


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