1932
0
  1. Home
  2. A-Z Publications
  3. Annual Review of Condensed Matter Physics
  4. Volume 15, 2024
  5. Article

Annual Review of Condensed Matter Physics

Volume 15, 2024

: Smart Network Adaptation

Abstract

Life evolved organisms to adapt dynamically to their environment and autonomously exhibit behaviors. Although complex behaviors in organisms are typically associated with the capability of neurons to process information, the unicellular organism disabuses us by solving complex tasks despite being just a single although gigantic cell shaped into a mesmerizing tubular network. In , smart behaviors arise as network tubes grow or shrink due to the mechanochemical coupling of contractile tubes, fluid flows, and transport across the network. Here, from a physicist's perspective, we introduce the biology and active chemomechanics of this living matter network. We review 's global response in migration and dynamic state to its environment before revisiting its network architecture and flow and transport patterns. Finally, we summarize recent studies on storing and processing information to mount well-informed behaviors.

Keyword(s): behavior, decision-making migration, fluid flow, mechanochemical coupling, morphogenesis
Loading

Article metrics loading...

/content/journals/10.1146/annurev-conmatphys-040821-115312
2024-03-11
2024-04-29
Loading full text...

Full text loading...

/deliver/fulltext/conmatphys/15/1/annurev-conmatphys-040821-115312.html?itemId=/content/journals/10.1146/annurev-conmatphys-040821-115312&mimeType=html&fmt=ahah

Literature Cited

  1. 1.
    Kauffman S, Wille JJ 1975. J. Theor. Biol. 55:47–93
  2. 2.
    Kjellin J, Avesson L, Reimegård J, Liao Z, Eichinger L, et al. 2021. Genome Res. 31(3):gr.272856.120
  3. 3.
    Schaap P, Barrantes I, Minx P, Sasaki N, Anderson RW et al. 2016. Genome Biol. Evol. 8:109–25
  4. 4.
    von Schweinitz LD 1822. Synopsis fungorum Carolinae superioris secundum obervationes Ludovici Davidis de Scweinitz Leipzig, Ger.: Johan Ambrosius Barth Verlag
  5. 5.
    Sauer HW 1982. Developmental Biology of Physarum Vol. 11. New York: Cambridge Univ. Press
  6. 6.
    Rusch HP, Sachsenmaier W, Behrens K, Gruter V 1966. J. Cell Biol. 31:204–9
  7. 7.
    Raub TJ, Aldrich HC. 1982. In Cell Biology of Physarum and DidymiumVol. II, Differentiation, Metabolism, and Methodology, ed. HC Aldrich, JW Daniel, pp. 21–75. New York: Academic
  8. 8.
    Alim K, Andrew N, Pringle A 2013. Curr. Biol. 23:24R1082–83
  9. 9.
    Nakagaki T, Yamada H, Tóth A 2000. Nature 407:470
  10. 10.
    Tero A, Takagi S, Saigusa T, Ito K, Bebber DP et al. 2010. Science 327:439–42
  11. 11.
    Fiore-Donno AM, Nikolaev SI, Nelson M, Pawlowski J, Cavalier-Smith T, Baldauf SL 2010. Protist 161:55–70
  12. 12.
    Glöckner G, Golderer G, Werner-Felmayer G, Meyer S, Marwan W 2008. BMC Genom. 9:6
  13. 13.
    Marwan W. 2001. In Comprehensive Series in Photosciences, Vol. 1, ed. D-P Häder, M Lebert, pp. 561–87. Amsterdam: Elsevier Sci. Technol.
  14. 14.
    Gerber T, Loureiro C, Schramma N, Chen S, Jain A et al. 2022. eLife 11:e69745
  15. 15.
    Hara S, Ohta J 1981. Bot. Mag. Tokyo 94:283–89
  16. 16.
    Stockem W, Brix K. 1994. In International Review of Cytology, Vol. 149, ed. KW Jeon, J Jarvik, pp. 145–215. New York: Elsevier
  17. 17.
    Oettmeier C, Lee J, Döbereiner HG 2018. J. Phys. D: Appl. Phys. 51:13134006
  18. 18.
    Glöckner G, Marwan W 2017. Sci. Rep. 7:12304
  19. 19.
    Patterson MA, Scheetz RW 1977. Protoplasma 92:3–4253–61
  20. 20.
    Ogawa K, Sato M, Ashihara H, Kaneko TS 2010. Cytologia 75:4397–407
  21. 21.
    Oettmeier C, Brix K, Döbereiner HG 2017. J. Phys. D: Appl. Phys. 50:413001
  22. 22.
    Alexopoulos CJ, Mims CW 1979. Introductory Mycology New York: John Wiley and Sons. 3rd ed.
  23. 23.
    Isenberg G, Wohlfarth-Bottermann KE 1976. Cell Tissue Res. 173:4495–528
  24. 24.
    Sesaki H, Ogihara S 1997. Cell Struct. 22:2279–89
  25. 25.
    Reid CR, Latty T, Dussutour A, Beekman M 2012. PNAS 109:4317490–94
  26. 26.
    Reid CR, Beekman M, Latty T, Dussutour A 2013. Behav. Ecol. 24:4812–18
  27. 27.
    Huynh TT, Phung TV, Stephenson SL, Tran HT 2017. BMC Biotechnol. 17:76
  28. 28.
    McCormick JJ, Blomquist JC, Rusch HP 1970. J. Bacteriol. 104:31110–18
  29. 29.
    Wolf KV, Hoffmann HU, Stockem W 1981. Protoplasma 107:3–4345–59
  30. 30.
    Patino-Ramirez F, Boussard A, Arson C, Dussutour A 2019. Sci. Rep. 9:15444
  31. 31.
    Wohlfarth-Bottermann KE 1974. J. Cell. Sci. 16:23–37
  32. 32.
    Achenbach F, Naib-Majani W, Wohlfarth-Bottermann K 1979. J. Cell. Sci. 36:355–59
  33. 33.
    Wohlfarth-Bottermann KE, Stockem W 1970. Wilhelm Roux Arch. Entwicklungsmechanik Organismen 164:4321–40
  34. 34.
    Hasegawa T, Sho T, Hiroshi H, Sadashi H 1980. Biochemistry 19:122677–83
  35. 35.
    Ozaki K, Hatano S 1984. J. Cell Biol. 98:61919–25
  36. 36.
    Brix K, Stockem W 1987. Cell Biol. Int. Rep. 11:7529–36
  37. 37.
    Ishigami M, Kuroda K, Hatano S 1987. J. Cell Biol. 105:381–86
  38. 38.
    Wohlfarth-Bottermann KE, Fleischer M 1976. Cell Tissue Res. 165:3327–44
  39. 39.
    Kukulies J, Stockem W, Achenbach F 1984. Eur. J. Cell Biol. 35:2235–45
  40. 40.
    Gawlitta W, Wolf K, Hoffmann HU, Stockem W 1980. Cell Tissue Res. 209:72–76
  41. 41.
    Salles-Passador I, Moisand A, Planques V, Wright M 1991. J. Cell. Sci. 100:3509–20
  42. 42.
    Steffan B, Praemassing M, Steglich W 1987. Tetrahedron Lett. 28:323667–70
  43. 43.
    Eisenbarth S, Steffan B 2000. Tetrahedron 56:3363–65
  44. 44.
    Schreckenbach T, Walckhoff B, Verfuerth C 1981. PNAS 78:21009–13
  45. 45.
    Mela AP, Rico-Ramírez AM, Glass NL 2020. Cells 9:102255
  46. 46.
    Wohlfarth-Bottermann KE. 1983. In The Application of Laser Light Scattering to the Study of Biological Motion, ed. JC Earnshaw, MW Steer, pp. 501–17. Boston: Springer
  47. 47.
    Howard FL. 1932. Ann. Bot. os-46(3):461–77
  48. 48.
    Goodman EM. 1982. In Cell Biology of Physarum and Didymium, Vol. II, Differentiation, Metabolism, and Methodology, ed. HC Aldrich, JW Daniel, pp. 101–28. New York: Academic
  49. 49.
    Bekers AG, Gijzen HJ, Taalman RDFM, Wanka F 1981. J. Ultrastruct. Res. 75:3352–62
  50. 50.
    Lachapelle M, Lafontaine JG 1987. J. Electron Microsc. Tech. 5:3227–41
  51. 51.
    Tanaka K 1973. J. Cell Biol. 57:220–24
  52. 52.
    Guttes E, Guttes S, Rusch HP 1961. Dev. Biol. 3:5588–614
  53. 53.
    Kubbies M, Pierron G 1983. Exp. Cell Res. 149:57–67
  54. 54.
    Haupt M, Hauser MJB 2020. New J. Phys. 22:053007
  55. 55.
    Mogilner A, Manhart A 2018. Annu. Rev. Fluid Mech. 50:347–70
  56. 56.
    Burla F, Mulla Y, Vos BE, Aufderhorst-Roberts A, Koenderink GH 2019. Nat. Rev. Phys. 1:4249–63
  57. 57.
    Banerjee S, Gardel ML, Schwarz US 2020. Annu. Rev. Condens. Matter Phys. 11:421–39
  58. 58.
    Kruse K, Joanny JF, Jülicher F, Prost J, Sekimoto K 2005. Eur. Phys. J. E Soft Matter 16:5–16
  59. 59.
    Joanny JF, Prost J 2009. HFSP J. 3:294–104
  60. 60.
    Radszuweit M, Alonso S, Engel H, Bär M 2013. Phys. Rev. Lett. 110:13138102
  61. 61.
    Oster GF, Odell GM 1984. Cell Motil. 4:6469–503
  62. 62.
    Tero A, Kobayashi R, Nakagaki T 2005. Physica D 205:1–4125–35
  63. 63.
    Smith DA 1994. Protoplasma 177:3–4171–80
  64. 64.
    Teplov VA, Romanovsky YM, Latushkin OA 1991. BioSystems 24:4269–89
  65. 65.
    Romanovskii YM, Teplov V 1995. Uspekhi Fizicheskih Nauk 165:5555
  66. 66.
    Alonso S, Radszuweit M, Engel H, Bär M 2017. J. Phys. D: Appl. Phys. 50:43434004
  67. 67.
    Fessel A, Oettmeier C, Wechsler K, Döbereiner HG 2018. J. Phys. D: Appl. Phys. 51:2024005
  68. 68.
    Sato M, Wong TZ, Allen RD 1983. J. Cell Biol. 97:41089–97
  69. 69.
    Dembo M, Harlow F 1986. Biophys. J. 50:109–21
  70. 70.
    Radszuweit M, Engel H, Bär M 2011. Eur. Phys. J. Spec. Top. 191:159–72
  71. 71.
    Radszuweit M, Engel H, Bär M 2014. PLOS ONE 9:6e99220
  72. 72.
    Lewis OL, Zhang S, Guy RD, Del Álamo JC 2015. J. R. Soc. Interface 12:10620141359
  73. 73.
    Kulawiak DA, Löber J, Bär M, Engel H 2018. J. Phys. D: Appl. Phys. 52:014004
  74. 74.
    Kulawiak DA, Löber J, Bär M, Engel H 2019. PLOS ONE 14:8e0217447
  75. 75.
    Bois JS, Jülicher F, Grill SW 2011. Phys. Rev. Lett. 106:2028103
  76. 76.
    Kohama K, Oosawa M, Ito T, Maruyama K 1988. J. Biochem. 104:6995–98
  77. 77.
    Joanny JF, Kruse K, Prost J, Ramaswamy S 2013. Eur. Phys. J. E Soft Matter 36:552
  78. 78.
    Guy RD, Nakagaki T, Wright GB 2011. Phys. Rev. E 84:016310
  79. 79.
    Brix K, Kukulies J, Stockem W 1987. Protoplasma 137:2–3156–67
  80. 80.
    Sherratt JA, Lewis J 1993. Bull. Math. Biol. 55:3637–54
  81. 81.
    Carafoli E, Krebs J 2016. J. Biol. Chem. 291:4020849–57
  82. 82.
    Berridge MJ, Lipp P, Bootman MD 2000. Nat. Rev. Mol. 1:11–21
  83. 83.
    Carafoli E 2002. PNAS 99:31115–22
  84. 84.
    Brookes PS, Yoon Y, Robotham JL, Anders MW, Sheu SS 2004. Am. J. Physiol. Cell Physiol. 287:4C817–33
  85. 85.
    Hepler PK 2016. Plant Physiol. 170:3–22
  86. 86.
    Wohlfarth-Bottermann KE 1979. J. Exp. Biol. 81:15–32
  87. 87.
    Teplov VA 2017. J. Phys. D: Appl. Phys. 50:213002
  88. 88.
    Kato T, Tonomura Y 1977. J. Biochem. 81:207–13
  89. 89.
    Yoshiyama S, Ishigami M, Nakamura A, Kohama K 2009. Cell Biol. Int. 34:35–40
  90. 90.
    Ridgway EB, Durham AC 1976. J. Cell Biol. 69:223–26
  91. 91.
    Yoshimoto Y, Matsumura F, Kamiya N 1981. Cell Motil. 1:4433–43
  92. 92.
    Kato T, Tonomura Y 1975. J. Biochem. 77:61127–34
  93. 93.
    Kuroda R, Kuroda H 1982. J. Cell. Sci. 53:37–48
  94. 94.
    Kohama K, Kobayashi K, Mitani S 1980. Proc. Jpn. Acad. Ser. B Phys. Biol. Sci. 56:9591–96
  95. 95.
    Kawamichi H, Zhang Y, Hino M, Nakamura A, Tanaka H, et al. 2007. In Regulatory Mechanisms of Striated Muscle Contraction, Vol. 592, ed. S Ebashi, I Ohtsuki, pp. 265–72. Tokyo: Springer
  96. 96.
    Kohama K 2016. Proc. Jpn. Acad. Ser. B Phys. Biol. Sci. 92:10478–98
  97. 97.
    Yoshimoto Y, Sakai T, Kamiya N 1981. Protoplasma 109:1–2159–68
  98. 98.
    Yoshimoto Y, Kamiya N 1984. Cell Struct. 9:2135–41
  99. 99.
    Kamiya N 1981. Annu. Rev. Plant Physiol. 32:205–36
  100. 100.
    Sugino H, Matsumura F 1983. J. Cell Biol. 96:199–203
  101. 101.
    Hirose T, Ueda T, Kobatake Y 1980. Microbiology 121:175–80
  102. 102.
    Swaminathan R, Hoang CP, Verkman AS 1997. Biophys. J. 72:41900–7
  103. 103.
    Oettmeier C, Döbereiner HG 2019. PLOS ONE 14:4e0215622
  104. 104.
    Alim K 2018. Philos. Trans. R. Soc. B Biol. Sci. 373:174720170112
  105. 105.
    Kamiya N 1950. Cytologia 15:3–4183–93
  106. 106.
    Bykov AV, Priezzhev AV, Lauri J, Myllylä R 2009. J. Biophoton. 2:8–9540–47
  107. 107.
    Stewart PA, Stewart BT 1959. Exp. Cell Res. 17:44–58
  108. 108.
    Lewis OL, Guy RD 2017. J. Phys. D: Appl. Phys. 50:284001
  109. 109.
    Alim K, Amselem G, Peaudecerf F, Brenner MP, Pringle A 2013. PNAS 110:3313306–11
  110. 110.
    Alim K, Andrew N, Pringle A, Brenner MP 2017. PNAS 114:205136–41
  111. 111.
    Julien JD, Alim K 2018. PNAS 115:4210612–17
  112. 112.
    Kramar M, Alim K 2021. PNAS 118:10e2007815118
  113. 113.
    Kessler D. 1982. In Cell Biology of Physarum and DidymiumVol. I, Organisms, Nucleus, and Cell Cycle, ed. HC Aldrich, JW Daniel, pp. 145–208. New York: Academic
  114. 114.
    Rieu JP, Delanoë-Ayari H, Takagi S, Tanaka Y, Nakagaki T 2015. J. R. Soc. Interface 12:10620150099
  115. 115.
    Rodiek B, Takagi S, Ueda T, Hauser MJ 2015. Eur. Biophys. J. 44:5349–58
  116. 116.
    Takagi S, Ueda T 2008. Physica D 237:3420–27
  117. 117.
    Zhang S, Lasheras JC, del Álamo JC 2019. J. Phys. D: Appl. Phys. 52:49494004
  118. 118.
    Zhang S, Guy RD, Lasheras JC, Del Álamo JC 2017. J. Phys. D: Appl. Phys. 50:204004
  119. 119.
    Hato M, Ueda T, Kurihara K, Kobatake Y 1976. Cell Struct. 1:3269–78
  120. 120.
    Matsumoto K, Takagi S, Nakagaki T 2008. Biophys. J. 94:72492–504
  121. 121.
    Ueda KI, Takagi S, Nishiura Y, Nakagaki T 2011. Phys. Rev. E 83:2021916
  122. 122.
    Maruyama K 1964. J. Biol. Chem. 55:3277–86
  123. 123.
    Tanaka Y, Ito K, Nakagaki T, Kobayashi R 2012. J. R. Soc. Interface 9:67222–33
  124. 124.
    Sesaki H, Ogihara S 1997. J. Cell. Sci. 110:7809–18
  125. 125.
    Charras G, Paluch E 2008. Nat. Rev. Mol. 9:9730–36
  126. 126.
    Yoshida K, Soldati T 2006. J. Cell. Sci. 119:183833–44
  127. 127.
    Kukulies J, Stockem WS, Wohlfarth-Bottermann KE 1983. Z. Naturforsch. C J. Biosci. 38:7–8589–99
  128. 128.
    Kuroda S, Takagi S, Nakagaki T, Ueda T 2015. J. Exp. Biol. 218:233729–38
  129. 129.
    Iima M, Nakagaki T 2012. Math. Med. Biol. 29:3263–81
  130. 130.
    Iima M, Kori H, Nakagaki T 2017. J. Phys. D: Appl. Phys. 50:15154004
  131. 131.
    Jones J 2010. Artif. Life 16:2127–53
  132. 132.
    Baumgarten W, Jones J, Hauser MJ 2015. Acta Phys. Pol. B 46:61201–18
  133. 133.
    Schenz D, Shima Y, Kuroda S, Nakagaki T, Ueda KI 2017. J. Phys. D: Appl. Phys. 50:434001
  134. 134.
    Rodiek B, Hauser MJ 2015. Eur. Phys. J. Spec. Top. 224:71199–214
  135. 135.
    Satoh H, Ueda T, Kobatake Y 1985. Exp. Cell Res. 156:79–90
  136. 136.
    Chet I, Mitchell R 1976. Annu. Rev. Microbiol. 30:221–39
  137. 137.
    Jakuszeit T, Lindsey-Jones J, Peaudecerf FJ, Croze OA 2021. Eur. Phys. J. E Soft Matter 44:332
  138. 138.
    Coman D 1940. Arch. Pathol. 29:220–28
  139. 139.
    Carlile MJ 1970. J. Gen. Microbiol. 63:2221–26
  140. 140.
    Ueda T, Terayama K, Kurihara K, Kobatake Y 1975. J. Physiol. 65:2223–34
  141. 141.
    Durham AC, Ridgway EB 1976. J. Cell Biol. 69:218–23
  142. 142.
    Terayama K, Ueda T, Kurihara K, Kobatake Y 1977. J. Membr. 34:369–81
  143. 143.
    Hato M, Ueda T, Kurihara K, Kobatake Y 1976. Biochim. Biophys. Acta 426:73–80
  144. 144.
    Chet I, Naveh A, Henis Y 1977. J. Gen. Microbiol. 102:145–48
  145. 145.
    Kincaid RL, Mansour TE 1978. Exp. Cell Res. 116:2377–85
  146. 146.
    Knowles DJC, Carlile MJ 1978. J. Gen. Microbiol. 108:9–15
  147. 147.
    McClory A, Coote JG 1985. FEMS Microbiol. Lett. 26:2195–200
  148. 148.
    Ueda T, Kobatake Y. 1982. In Cell Biology of Physarum and Didymium, Vol. I, Organisms, Nucleus, and Cell Cycle, ed. HC Aldrich, JW Daniel, pp. 111–43. New York: Academic
  149. 149.
    Denbo JR, Miller DM 1976. Comp. Biochem. Physiol. 55:5–12
  150. 150.
    Kincaid RL, Mansour TE 1978. Exp. Cell Res. 116:2365–75
  151. 151.
    Knowles DJ, Carlile MJ 1978. J. Gen. Microbiol. 108:17–25
  152. 152.
    Ueda T, Muratsugu M, Kurihara K, Kobatake Y 1976. Exp. Cell Res. 100:2337–44
  153. 153.
    Ueda T, Hasumoto M, Akitaya T, Kobatake Y 1985. Protoplasma 124:3219–23
  154. 154.
    Denbo JR, Miller DM 1978. Comp. Biochem. Physiol. 60:3269–72
  155. 155.
    Ueda T, Matsumoto K, Akitaya T, Kobatake Y 1986. Exp. Cell Res. 162:2486–94
  156. 156.
    Natsume K, Miyake Y, Yano M, Shimizu H 1992. Protoplasma 166:1–255–60
  157. 157.
    Chen S, Alim K 2023. Phys. Biol. 20:4046003
  158. 158.
    Miyake Y, Tada H, Yano M, Shimizu H 1994. Cell Struct. 19:6363–70
  159. 159.
    Reserva RL, Micompal MTMM, Mendoza KC, Confesor MNP 2021. Biochem. Biophys. Res. Commun. 550:171–76
  160. 160.
    Nakagaki T, Yamada H, Ueda T 2000. Biophys. Chem. 84:3195–204
  161. 161.
    Takamatsu A, Takaba E, Takizawa G 2009. J. Theor. Biol. 256:29–44
  162. 162.
    Latty T, Beekman M 2011. Proc. Royal Soc. B. Proc. Biol. Sci. 278:1705539–45
  163. 163.
    Kamiya N 1940. Science 92:2394462–63
  164. 164.
    Mori Y, Matsumoto K, Ueda T, Kobatake Y 1986. Protoplasma 135:31–37
  165. 165.
    Nakagaki T, Iima M, Ueda T, Nishiura Y, Saigusa T et al. 2007. Phys. Rev. Lett. 99:6068104
  166. 166.
    Baüerle FK, Karpitschka S, Alim K 2020. Phys. Rev. Lett. 124:998102
  167. 167.
    Block I, Wohlfarth-Bottermann KE 1981. Cell Biol. Int. Rep. 5:73–81
  168. 168.
    Baranowkski Z, Shraideh Z, Wohlfarth-Bottermann K 1982. Cell Biol. Int. Rep. 6:9859–65
  169. 169.
    Takamatsu A, Takahashi K, Nagao M, Tsuchiya Y 1997. J. Phys. Soc. Jpn. 66:61638–46
  170. 170.
    Nakagaki T, Yamada H, Ueda T 1999. Biophys. Chem. 82:23–28
  171. 171.
    Ueda T, Mori Y, Nakagaki T, Kobatake Y 1988. Photochem. Photobiol. 47:2271–75
  172. 172.
    Schreckenbach T. 1984. In Blue Light Effects in Biological Systems, ed. H Senger, pp. 463–75. Berlin: Springer-Verlag
  173. 173.
    Starostzik C, Marwan W 2008. Photochem. Photobiol. 62:5930–33
  174. 174.
    Starostzik C, Marwan W 1995. FEBS Lett. 370:1–2146–48
  175. 175.
    Nakagaki T, Umemura S, Kakiuchi Y, Ueda T 1996. Photochem. Photobiol. 64:5859–62
  176. 176.
    Lamparter T, Marwan W 2001. Photochem. Photobiol. 73:6697
  177. 177.
    Rätzel V, Ebeling B, Hoffmann XK, Tesmer J, Marwan W 2013. Dev. Growth Differ. 55:2247–59
  178. 178.
    Tasaki I, Kamiya N 1950. Protoplasma 39:3333–43
  179. 179.
    Kishimoto U 1958. J. Gen. Physiol. 41:61205–22
  180. 180.
    Kishimoto U 1958. J. Gen. Physiol. 41:61223–44
  181. 181.
    Anderson JD 1951. J. Physiol. 35:1–16
  182. 182.
    Fingerle J, Gradmann D 1982. J. Membr. 68:67–77
  183. 183.
    Grigoriev PA, Matveeva NB, Teplov VA 2016. Biophys. (Russ. Fed.) 61:5748–54
  184. 184.
    Kuroda H, Kuroda R 1981. J. Physiol. 78:6637–55
  185. 185.
    Kuroda H, Kuroda R, Sakai T 1989. Biochim. Biophys. Acta Biomembr. 987:2154–64
  186. 186.
    Iwamura T 1949. Shokubutsugaku Zasshi 62:735–736126–31
  187. 187.
    Meyer R, Stockem W 1979. Cell Biol. Int. Rep. 3:4321–30
  188. 188.
    Zheng Y, Jia R, Qian Y, Ye Y, Liu C 2015. BioSystems 132–133:13–19
  189. 189.
    Korohoda W, Mycielska M, Janda E, Madeja Z 2000. Cell Motil. Cytoskelet. 45:10–26
  190. 190.
    Ogawa N, Oku H, Hashimoto K, Ishikawa M 2006. J. Theor. Biol. 242:2314–28
  191. 191.
    Daul A, Lemloh ML, Hörning M 2022. New J. Phys. 24:053040
  192. 192.
    Allen GM, Mogilner A, Theriot JA 2013. Curr. Biol. 23:7560–68
  193. 193.
    Yang HY, Charles RP, Hummler E, Baines DL, Isseroff RR 2013. J. Cell. Sci. 126:91942–51
  194. 194.
    De la Fuente IM, Bringas C, Malaina I, Fedetz M, Carrasco-Pujante J et al. 2019. Nat. Commun. 10:3690
  195. 195.
    Tso WW, Mansour TE 1975. Behav. Biol. 14:4499–504
  196. 196.
    Achenbach U, Wohlfarth-Bottermann KE 1980. Planta 150:2180–88
  197. 197.
    Wolf R, Niemuth J, Sauer H 1997. Protoplasma 197:1–2121–31
  198. 198.
    Wohlfarth-Bottermann KE 1977. J. Exp. Biol. 67:49–59
  199. 199.
    Hejnowicz Z, Wohlfarth-Bottermann KE 1980. Planta 150:2144–52
  200. 200.
    Halvorsrud R, Laane MM, Giaever I 1995. Biol. Rhythm Res. 26:3316–30
  201. 201.
    Takamatsu A, Yamamoto T, Fujii T 2004. BioSystems 76:1–3133–40
  202. 202.
    Kamiya N 1959. Protoplasmic Streaming Vienna: Springer
  203. 203.
    Tawada K, Oasawa F 1972. J. Protozool. Res. 19:53–57
  204. 204.
    Nakaoka Y, Oosawa F 1977. J. Protozool. Res. 24:4575–80
  205. 205.
    Poff KL, Skokut M 1977. PNAS 74:52007–10
  206. 206.
    Bahat A, Tur-Kaspa I, Gakamsky A, Giojalas LC, Breitbart H, Eisenbach M 2003. Nat. Med 9:2149–50
  207. 207.
    Demir M, Salman H 2012. Biophys. J. 103:81683–90
  208. 208.
    Umedachi T, Ito K, Kobayashi R, Ishiguro A, Nakagaki T 2017. J. Phys. D: Appl. Phys. 50:25254002
  209. 209.
    Murugan NJ, Kaltman DH, Jin PH, Chien M, Martinez R et al. 2021. Adv. Mater. 33:342008161
  210. 210.
    Roca-Cusachs P, Sunyer R, Trepat X 2013. Curr. Opin. Cell Biol. 25:5543–49
  211. 211.
    Sunyer R, Trepat X 2020. Curr. Biol. 30:9R383–87
  212. 212.
    Plant TD 2014. Handb. Exp. Pharmacol. 223:743–66
  213. 213.
    Achenbach U 1982. Cell Biol. Int. Rep. 6:111005–11
  214. 214.
    Block I, Wolke A, Briegleb W, Wohlfarth-Bottermann KE, Merbold U et al. 1994. Life Sci. Space Res. (Amst.) 366:August43
  215. 215.
    Häder DP 1999. Adv. Space Res. 24:6843–50
  216. 216.
    Baumgarten W, Ueda T, Hauser MJB 2010. Phys. Rev. E 82:4046113
  217. 217.
    Fessel A, Oettmeier C, Bernitt E, Gauthier N, Döbereiner HG 2012. Phys. Rev. Lett. 109:7078103
  218. 218.
    Fricker MD, Akita D, Heaton LL, Jones N, Obara B, Nakagaki T 2017. J. Phys. D: Appl. Phys. 50:25254005
  219. 219.
    Marbach S, Alim K, Andrew N, Pringle A, Brenner MP 2016. Phys. Rev. Lett. 117:17178103
  220. 220.
    Akita D, Kunita I, Fricker MD, Kuroda S, Sato K, Nakagaki T 2016. J. Phys. D: Appl. Phys. 50:2024001
  221. 221.
    Murray CD 1926. PNAS 12:3207–14
  222. 222.
    West GB, Brown JH, Enquist BJ 1997. Science 276:5309122–26
  223. 223.
    Kassab GS, Fung YCB 1995. Ann. Biomed. Eng. 23:13–20
  224. 224.
    McCulloh KA, Sperry JS, Adler FR 2003. Nature 421:6926939–42
  225. 225.
    Bohn S, Magnasco MO 2007. Phys. Rev. Lett. 98:8088702
  226. 226.
    Durand M 2006. Phys. Rev. E 73:016116
  227. 227.
    Durand M 2007. Phys. Rev. Lett. 98:8088701
  228. 228.
    Corson F 2010. Phys. Rev. Lett. 104:4048703
  229. 229.
    Katifori E, Szöllősi GJ, Magnasco MO 2010. Phys. Rev. Lett. 104:4048704
  230. 230.
    Ronellenfitsch H, Katifori E 2019. Phys. Rev. Lett. 123:24248101
  231. 231.
    Tero A, Kobayashi R, Nakagaki T 2006. Physica A 363:115–19
  232. 232.
    Gräwer J, Modes CD, Magnasco MO, Katifori E 2015. Phys. Rev. E 92:012801
  233. 233.
    Tero A, Kobayashi R, Nakagaki T 2007. J. Theor. Biol. 244:4553–64
  234. 234.
    Tero A, Yumiki K, Kobayashi R, Saigusa T, Nakagaki T 2008. Theory Biosci. 127:289–94
  235. 235.
    Gao C, Chen S, Li X, Huang J, Zhang Z 2017. Appl. Soft Comput. 61:239–55
  236. 236.
    Gao C, Liu C, Schenz D, Li X, Zhang Z et al. 2019. Phys. Life Rev. 29:51–54
  237. 237.
    Busson V, Saiseau R, Durand M 2022. J. Phys. D: Appl. Phys. 55:41415401
  238. 238.
    Takamatsu A, Gomi T, Endo T, Hirai T, Sasaki T 2017. J. Phys. D: Appl. Phys. 50:15154003
  239. 239.
    Marbach S, Ziethen N, Bastin L, Bäuerle FK, Alim K 2023. eLife 12:e78100
  240. 240.
    Mori Y, Koaze A 2013. Mycoscience 54:6426–28
  241. 241.
    Li M, Brasseur JG 1993. J. Fluid Mech. 248:129–51
  242. 242.
    Fleig P, Kramar M, Wilczek M, Alim K 2022. eLife 11:e62863
  243. 243.
    Wilkinson R, Koziol M, Alim K, Roper M 2023. Fungal Ecol. 65:101283 https://dx.doi.org/10.2139/ssrn.4267724
  244. 244.
    Yoshimoto Y, Kamiya N 1978. Protoplasma 95:1–2123–33
  245. 245.
    Hejnowicz Z, Hinz I, Wohlfarth-Bottermann KE 1984. J. Interdiscip. Cycle Res. 15:4251–66
  246. 246.
    Yoshimoto Y, Kamiya N 1978. Protoplasma 95:1–289–99
  247. 247.
    Samans KE, Hinz I, Hejnowicz Z, Wohlfarth-Bottermann KE 1984. J. Interdiscip. Cycle Res. 15:4241–50
  248. 248.
    Wohlfarth-Bottermann K, Vonolenhusen K 1977. Cell Biol. Int. Rep. 1:3239–47
  249. 249.
    Proskurin SG, Avsievich TI 2014. Biophys. 59:6928–34
  250. 250.
    Avsievich TI, Frolov SV, Proskurin SG 2017. J. Phys. D: Appl. Phys. 50:22224003
  251. 251.
    Korohoda W, Shraideh Z, Baranowski Z, Wohlfarth-Bottermann KE 1983. Cell Tissue Res. 231:3675–91
  252. 252.
    Taylor GI 1953. Proc. R. Soc. A 219:1137186–203
  253. 253.
    Aris R 1956. Proc. R. Soc. A 235:120067–77
  254. 254.
    Natsume K, Miyake Y, Yano M, Shimizu H 1993. Cell Struct. 18:2111–15
  255. 255.
    Dussutour A, Latty T, Beekman M, Simpson SJ 2010. PNAS 107:104607–11
  256. 256.
    Reid CR, MacDonald H, Mann RP, Marshall JAR, Latty T, Garnier S 2016. J. R. Soc. Interface 13:11920160030–38
  257. 257.
    Keim NC, Paulsen JD, Zeravcic Z, Sastry S, Nagel SR 2019. Rev. Mod. Phys. 91:335002
  258. 258.
    Saigusa T, Tero A, Nakagaki T, Kuramoto Y 2008. Phys. Rev. Lett. 100:018101
  259. 259.
    Vogel D, Dussutour A 2016. Proc. R. Soc. B 283:184520162382–6
  260. 260.
    Boussard A, Delescluse J, Pérez-Escudero A, Dussutour A 2019. Philos. Trans. R. Soc. 374:177420180368–10
  261. 261.
    Bhattacharyya K, Zwicker D, Alim K 2022. Phys. Rev. Lett. 129:2028101
  262. 262.
    Bhattacharyya K, Zwicker D, Alim K 2022. Phys. Rev. E 3:21–16
  263. 263.
    Shannon CE 1948. Bell Syst. Tech. J. 27:4623–56
  264. 264.
    Ray SK, Valentini G, Shah P, Haque A, Reid CR et al. 2019. Front. Ecol. Evol. 7:13306–11
  265. 265.
    Latty T, Beekman M 2009. Behav. Ecol. 20:61160–67
  266. 266.
    Kim SJ, Aono M, Hara M 2010. BioSystems 101:29–36
  267. 267.
    Sutton R, Barto A 1998. Reinforcement Learning: An Introduction Cambridge, MA: MIT Press
  268. 268.
    Boisseau RP, Vogel D, Dussutour A 2016. Proc. R. Soc. B 283:182920160446
  269. 269.
    Rankin CH, Abrams T, Barry RJ, Bhatnagar S, Clayton DF et al. 2009. Neurobiol. Learn. Mem. 92:2135–38
  270. 270.
    Dussutour A 2021. Biochem. Biophys. Res. Commun. 564:92–102
  271. 271.
    Shirakawa T, Gunji YP 2007. Biophys. Chem. 128:2–3253–60
  272. 272.
    Kunita I, Ueda KI, Akita D, Kuroda S, Nakagaki T 2017. J. Phys. D: Appl. Phys. 50:35354002
  273. 273.
    Lee J, Oettmeier C, Döbereiner H-G 2018. J. Phys. D: Appl. Phys. 51:24244002
  274. 274.
    Boussard A, Fessel A, Oettmeier C, Briard L, Döbereiner HG, Dussutour A 2021. Philos. Trans. R. Soc. 376:182020190757
/content/journals/10.1146/annurev-conmatphys-040821-115312
Loading
Physarum polycephalum: Smart Network Adaptation
Annual Review of Condensed Matter Physics 15, 263 (2024); https://doi.org/10.1146/annurev-conmatphys-040821-115312
/content/journals/10.1146/annurev-conmatphys-040821-115312
/content/journals/10.1146/annurev-conmatphys-040821-115312
Loading

Data & Media loading...

  • Article Type: Review Article

Most Cited Most Cited RSS feed

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error