1932

Abstract

Yellow dwarf viruses are the most economically important and widespread viruses of cereal crops. Although they share common biological properties such as phloem limitation and obligate aphid transmission, the replication machinery and associated -acting signals of these viruses fall into two unrelated taxa represented by and . Here, we explain the reclassification of these viruses based on their very different genomes. We also provide an overview of viral protein functions and their interactions with the host and vector, replication mechanisms of viral and satellite RNAs, and the complex gene expression strategies. Throughout, we point out key unanswered questions in virus evolution, structural biology, and genome function and replication that, when answered, may ultimately provide new tools for virus management.

[Erratum, Closure]

An erratum has been published for this article:
Erratum: Yellow Dwarf Viruses of Cereals: Taxonomy and Molecular Mechanisms
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2022-08-26
2024-04-26
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Literature Cited

  1. 1.
    Ali M, Hameed S, Tahir M. 2014. Luteovirus: insights into pathogenicity. Arch. Virol. 159:2853–60
    [Google Scholar]
  2. 2.
    Allen E, Wang S, Miller WA. 1999. Barley yellow dwarf virus RNA requires a cap-independent translation sequence because it lacks a 5′ cap. Virology 253:139–44
    [Google Scholar]
  3. 3.
    Almasi R, Miller WA, Ziegler-Graff V. 2015. Mild and severe cereal yellow dwarf viruses differ in silencing suppressor efficiency of the P0 protein. Virus Res 208:199–206
    [Google Scholar]
  4. 4.
    Aradottir GI, Crespo-Herrera L. 2021. Host plant resistance in wheat to barley yellow dwarf viruses and their aphid vectors: a review. Curr. Opin. Insect Sci. 45:59–68
    [Google Scholar]
  5. 5.
    Ashoub A, Rohde W, Prufer D. 1998. In planta transcription of a second subgenomic RNA increases the complexity of the subgroup 2 luteovirus genome. Nucleic Acids Res 26:420–26
    [Google Scholar]
  6. 6.
    Banks PM, Davidson JL, Bariana H, Larkin PJ. 1995. Effects of barley yellow dwarf virus on the yield of winter wheat. Aust. J. Agric. Res. 46:935–46
    [Google Scholar]
  7. 7.
    Barry JK, Miller WA. 2002. A-1 ribosomal frameshift element that requires base pairing across four kilobases suggests a mechanism of regulating ribosome and replicase traffic on a viral RNA. PNAS 99:11133–38
    [Google Scholar]
  8. 8.
    Bhardwaj U, Powell P, Goss DJ. 2019. Eukaryotic initiation factor (eIF) 3 mediates Barley yellow dwarf viral mRNA 3′-5′ UTR interactions and 40S ribosomal subunit binding to facilitate cap-independent translation. Nucleic Acids Res 47:6225–35
    [Google Scholar]
  9. 9.
    Bhatt PR, Scaiola A, Loughran G, Leibundgut M, Kratzel A et al. 2021. Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome. Science 372:1306–13
    [Google Scholar]
  10. 10.
    Bortolamiol D, Pazhouhandeh M, Marrocco K, Genschik P, Ziegler-Graff V. 2007. The Polerovirus F box protein P0 targets ARGONAUTE1 to suppress RNA silencing. Curr. Biol. 17:1615–21
    [Google Scholar]
  11. 11.
    Bouvaine S, Boonham N, Douglas AE. 2011. Interactions between a luteovirus and the GroEL chaperonin protein of the symbiotic bacterium Buchnera aphidicola of aphids. J. Gen. Virol. 92:1467–74
    [Google Scholar]
  12. 12.
    Brault V, Perigon S, Reinbold C, Erdinger M, Scheidecker D et al. 2005. The polerovirus minor capsid protein determines vector specificity and intestinal tropism in the aphid. J. Virol. 79:9685–93
    [Google Scholar]
  13. 13.
    Brault V, van den Heuvel JF, Verbeek M, Ziegler-Graff V, Reutenauer A et al. 1995. Aphid transmission of beet western yellows luteovirus requires the minor capsid read-through protein P74. EMBO J 14:650–59
    [Google Scholar]
  14. 14.
    Brown CM, Dinesh-Kumar SP, Miller WA 1996. Local and distant sequences are required for efficient read-through of the barley yellow dwarf virus-PAV coat protein gene stop codon. J. Virol. 70:5884–92
    [Google Scholar]
  15. 15.
    Bruns AN, Li S, Mohannath G, Bisaro DM. 2019. Phosphorylation of Arabidopsis eIF4E and eIFiso4E by SnRK1 inhibits translation. FEBS J. 286:3778–96
    [Google Scholar]
  16. 16.
    Byrne MJ, Steele JFC, Hesketh EL, Walden M, Thompson RF et al. 2019. Combining transient expression and cryo-EM to obtain high-resolution structures of luteovirid particles. Structure 27:1761–70.e3
    [Google Scholar]
  17. 17.
    Chalhoub BA, Kelly L, Robaglia C, Lapierre HD. 1994. Sequence variability in the genome-3′-terminal region of BYDV for 10 geographically distinct PAV-like isolates of barley yellow dwarf virus: analysis of the ORF6 variation. Arch. Virol. 139:403–16
    [Google Scholar]
  18. 18.
    Chay CA, Gunasinge UB, Dinesh-Kumar SP, Miller WA, Gray SM. 1996. Aphid transmission and systemic plant infection determinants of barley yellow dwarf luteovirus-PAV are contained in the coat protein readthrough domain and 17-kDa protein, respectively. Virology 219:57–65
    [Google Scholar]
  19. 19.
    Chen S, Jiang G, Wu J, Liu Y, Qian Y, Zhou X. 2016. Characterization of a novel polerovirus infecting maize in China. Viruses 8:120
    [Google Scholar]
  20. 20.
    Chen S, Han X, Yang L, Li Q, Shi Y et al. 2021. Identification and functional analyses of host factors interacting with the 17-kDa protein of barley yellow dwarf virus-GAV. Sci. Rep. 11:8453
    [Google Scholar]
  21. 21.
    Cheng SL, Domier LL, D'Arcy CJ. 1994. Detection of the readthrough protein of barley yellow dwarf virus. Virology 202:1003–6
    [Google Scholar]
  22. 22.
    Choudhury S, Hu H, Meinke H, Shabala S, Westmore G et al. 2017. Barley yellow dwarf viruses: infection mechanisms and breeding strategies. Euphytica 213:168
    [Google Scholar]
  23. 23.
    Cimino PA, Nicholson BL, Wu B, Xu W, White KA. 2011. Multifaceted regulation of translational readthrough by RNA replication elements in a tombusvirus. PLOS Pathog 7:e1002423
    [Google Scholar]
  24. 24.
    Csorba T, Lozsa R, Hutvagner G, Burgyan J. 2010. Polerovirus protein P0 prevents the assembly of small RNA-containing RISC complexes and leads to degradation of ARGONAUTE1. Plant J 62:463–72
    [Google Scholar]
  25. 25.
    D'Arcy CJ, Domier LL, Mayo MA 2000. Family Luteoviridae. Virus Taxonomy: Seventh Report of the International Committee on the Taxonomy of Viruses MHV van Regenmortel, CM Fauquet, DHL Bishop, EB Carstens, MK Estes, et al. 775–84 San Diego: Academic
    [Google Scholar]
  26. 26.
    D'Arcy CJ, Mayo M. 1997. Proposals for changes in luteovirus taxonomy and nomenclature. Arch. Virol. 142:1285–87
    [Google Scholar]
  27. 27.
    Davies C, Haseloff J, Symons RH. 1990. Structure, self-cleavage, and replication of two viroid-like satellite RNAs (virusoids) of subterranean clover mottle virus. Virology 177:216–24
    [Google Scholar]
  28. 28.
    DeBlasio SL, Xu Y, Johnson RS, Rebelo AR, MacCoss MJ et al. 2018. The interaction dynamics of two Potato leafroll virus movement proteins affects their localization to the outer membranes of mitochondria and plastids. Viruses 10:585
    [Google Scholar]
  29. 29.
    Delfosse VC, Barrios Barón MP, Distéfano AJ. 2021. What we know about poleroviruses: advances in understanding the functions of polerovirus proteins. Plant Pathol 70:1047–61
    [Google Scholar]
  30. 30.
    Derrien B, Baumberger N, Schepetilnikov M, Viotti C, De Cillia J et al. 2012. Degradation of the antiviral component ARGONAUTE1 by the autophagy pathway. PNAS 109:15942–46
    [Google Scholar]
  31. 31.
    Dinesh-Kumar SP, Miller WA 1993. Control of start codon choice on a plant viral RNA encoding overlapping genes. Plant Cell 5:679–92
    [Google Scholar]
  32. 32.
    Fan Q, Treder K, Miller WA. 2012. Untranslated regions of diverse plant viral RNAs vary greatly in translation enhancement efficiency. BMC Biotechnol 12:22
    [Google Scholar]
  33. 33.
    Filichkin SA, Brumfield S, Filichkin TP, Young MJ. 1997. In vitro interactions of the aphid endosymbiotic SymL chaperonin with barley yellow dwarf virus. J. Virol. 71:569–77
    [Google Scholar]
  34. 34.
    Filichkin SA, Lister RM, McGrath PF, Young MJ. 1994. In vivo expression and mutational analysis of the barley yellow dwarf virus readthrough gene. Virology 205:290–99
    [Google Scholar]
  35. 35.
    Fusaro AF, Barton DA, Nakasugi K, Jackson C, Kalischuk ML et al. 2017. The luteovirus P4 movement protein is a suppressor of systemic RNA silencing. Viruses 9:10294
    [Google Scholar]
  36. 36.
    Fusaro AF, Correa RL, Nakasugi K, Jackson C, Kawchuk L et al. 2012. The Enamovirus P0 protein is a silencing suppressor which inhibits local and systemic RNA silencing through AGO1 degradation. Virology 426:178–87
    [Google Scholar]
  37. 37.
    Garrett KA, Dendy SP, Power AG, Blaisdell GK, Alexander HM, McCarron JK. 2004. Barley yellow dwarf disease in natural populations of dominant tallgrass prairie species in Kansas. Plant Dis. 88:574
    [Google Scholar]
  38. 38.
    Giedroc DP, Cornish PV. 2008. Frameshifting RNA pseudoknots: structure and mechanism. Virus Res 139:193–208
    [Google Scholar]
  39. 39.
    Gildow FE, Gray SM. 1993. The aphid salivary gland basal lamina as a selective barrier associated with vector-specific transmission of barley yellow dwarf luteoviruses. Phytopathology 83:1293–302
    [Google Scholar]
  40. 40.
    Goertz GP, Pijlman GP. 2015. Dengue non-coding RNA: TRIMmed for transmission. Cell Host Microbe 18:133–34
    [Google Scholar]
  41. 41.
    Goodfellow I, Chaudhry Y, Gioldasi I, Gerondopoulos A, Natoni A et al. 2005. Calicivirus translation initiation requires an interaction between VPg and eIF 4 E. EMBO Rep 6:968–72
    [Google Scholar]
  42. 42.
    Gray S, Cilia M, Ghanim M. 2014. Circulative, “nonpropagative” virus transmission: an orchestra of virus-, insect-, and plant-derived instruments. Adv. Virus Res. 89:141–99
    [Google Scholar]
  43. 43.
    Gray S, Gildow FE. 2003. Luteovirus-aphid interactions. Annu. Rev. Phytopathol. 41:539–66
    [Google Scholar]
  44. 44.
    Gunawardene CD, Im JSH, White KA. 2021. RNA structure protects the 5′ end of an uncapped tombusvirus RNA genome from Xrn digestion. J. Virol. 95:e0103421
    [Google Scholar]
  45. 45.
    Gunawardene CD, Newburn LR, White KA. 2019. A 212-nt long RNA structure in the Tobacco necrosis virus-D RNA genome is resistant to Xrn degradation. Nucleic Acids Res 47:9329–42
    [Google Scholar]
  46. 46.
    Guo L, Allen E, Miller WA 2000. Structure and function of a cap-independent translation element that functions in either the 3′ or the 5′ untranslated region. RNA 6:1808–20
    [Google Scholar]
  47. 47.
    Guo L, Allen E, Miller WA 2001. Base-pairing between untranslated regions facilitates translation of uncapped, nonpolyadenylated viral RNA. Mol. Cell 7:1103–9
    [Google Scholar]
  48. 48.
    Gupta P, Rangan L, Ramesh TV, Gupta M. 2016. Comparative analysis of contextual bias around the translation initiation sites in plant genomes. J. Theor. Biol. 404:303–11
    [Google Scholar]
  49. 49.
    Hao X, Song S, Zhong Q, Hadano J-U-D, Guo J, Wu Y. 2021. Rescue of an infectious cDNA clone of barley yellow dwarf virus-GAV. Phytopathology 111:2383–91
    [Google Scholar]
  50. 50.
    Haseloff J, Symons RH. 1982. Comparative sequence and structure of viroid-like RNAs of two plant viruses. Nucleic Acids Res 10:3681–91
    [Google Scholar]
  51. 51.
    Hebrard E, Poulicard N, Gerard C, Traore O, Wu HC et al. 2010. Direct interaction between the Rice yellow mottle virus (RYMV) VPg and the central domain of the rice eIF(iso)4G1 factor correlates with rice susceptibility and RYMV virulence. Mol. Plant-Microbe Interact. 23:1506–13
    [Google Scholar]
  52. 52.
    Heck M, Brault V. 2018. Targeted disruption of aphid transmission: a vision for the management of crop diseases caused by Luteoviridae members. Curr. Opin. Virol. 33:24–32
    [Google Scholar]
  53. 53.
    Hinnebusch AG. 2006. eIF3: a versatile scaffold for translation initiation complexes. Trends Biochem. Sci. 31:553–62
    [Google Scholar]
  54. 54.
    Hwang YT, Kalischuk M, Fusaro AF, Waterhouse PM, Kawchuk L. 2013. Small RNA sequencing of Potato leafroll virus-infected plants reveals an additional subgenomic RNA encoding a sequence-specific RNA-binding protein. Virology 438:61–69
    [Google Scholar]
  55. 55.
    Int. Comm. Taxon. Viruses 2021. Virus taxonomy: 2020 release. International Committee on Taxonomy of Viruses. https://talk.ictvonline.org/taxonomy/
    [Google Scholar]
  56. 56.
    Jaag HM, Kawchuk L, Rohde W, Fischer R, Emans N, Prüfer D. 2003. An unusual internal ribosomal entry site of inverted symmetry directs expression of a potato leafroll polerovirus replication-associated protein. PNAS 100:8939–44
    [Google Scholar]
  57. 57.
    Jarosova J, Chrpova J, Sip V, Kundu K. 2013. A comparative study of the barley yellow dwarf virus species PAV and PAS: distribution, accumulation and host resistance. Plant Pathol 62:436–43
    [Google Scholar]
  58. 57a.
    Jin H, Du Z, Zhang Y, Antal J, Xia Zet al 2020. A distinct class of plant and animal viral proteins that disrupt mitosis by directly interrupting the mitotic entry switch Wee1-Cdc25-Cdk1. Sci. Adv 6:eaba3418
    [Google Scholar]
  59. 58.
    Jin Z, Wang X, Chang S, Zhou G 2004. The complete nucleotide sequence and its organization of the genome of Barley yellow dwarf virus-GAV. Sci. China Life Sci. 47:175–82
    [Google Scholar]
  60. 59.
    Ju J, Kim K, Lee K-J, Lee WH, Ju H-J. 2017. Localization of Barley yellow dwarf virus movement protein modulating programmed cell death in Nicotiana benthamiana. Plant Pathol. J. 33:53–65
    [Google Scholar]
  61. 60.
    Kelly L, Gerlach WL, Waterhouse PM. 1994. Characterisation of the subgenomic RNAs of an Australian isolate of barley yellow dwarf luteovirus. Virology 202:565–73
    [Google Scholar]
  62. 61.
    Khan MA, Goss DJ. 2019. Poly (A) binding protein enhances the binding affinity of potyvirus VPg to eukaryotic initiation factor eIF4F and activates in vitro translation. Int. J. Biol. Macromol. 121:947–55
    [Google Scholar]
  63. 62.
    Kim YG, Maas S, Wang SC, Rich A. 2000. Mutational study reveals that tertiary interactions are conserved in ribosomal frameshifting pseudoknots of two luteoviruses. RNA 6:1157–65
    [Google Scholar]
  64. 63.
    Koev G, Liu S, Beckett R, Miller WA. 2002. The 3′-terminal structure required for replication of barley yellow dwarf virus RNA contains an embedded 3′ end. Virology 292:114–26
    [Google Scholar]
  65. 64.
    Koev G, Miller WA. 2000. A positive strand RNA virus with three very different subgenomic RNA promoters. J. Virol. 74:5988–96
    [Google Scholar]
  66. 65.
    Koev G, Mohan BR, Miller WA. 1999. Primary and secondary structural elements required for synthesis of barley yellow dwarf virus subgenomic RNA1. J. Virol. 73:2876–85
    [Google Scholar]
  67. 66.
    Koonin EV, Dolja VV, Krupovic M, Kuhn JH. 2021. Viruses defined by the position of the virosphere within the replicator space. Microbiol. Mol. Biol. Rev. 85:4e0019320
    [Google Scholar]
  68. 67.
    Kraft JJ, Treder K, Peterson MS, Miller WA. 2013. Cation-dependent folding of 3′ cap-independent translation elements facilitates interaction of a 17-nucleotide conserved sequence with eIF4G. Nucleic Acids Res 41:3398–413
    [Google Scholar]
  69. 68.
    Krueger EN, Beckett RJ, Gray SM, Miller WA. 2013. The complete nucleotide sequence of the genome of Barley yellow dwarf virus-RMV reveals it to be a new Polerovirus distantly related to other yellow dwarf viruses. Front. Microbiol. 4:205
    [Google Scholar]
  70. 69.
    Lim S, Yoon Y, Jang YW, Bae S, Lee YH, Lee BC. 2018. First report of maize yellow mosaic virus on Zea mays in South Korea. Plant Dis. 102:1864
    [Google Scholar]
  71. 70.
    Linz LB, Liu S, Chougule NP, Bonning BC. 2015. In vitro evidence supports membrane alanyl aminopeptidase N as a receptor for a plant virus in the pea aphid vector. J. Virol. 89:11203–12
    [Google Scholar]
  72. 71.
    Lister RM, Ranieri R 1995. Distribution and economic importance of barley yellow dwarf. Barley Yellow Dwarf: 40 Years of Progress CJ D'Arcy, P Burnett 29–53 St. Paul, MN: APS Press
    [Google Scholar]
  73. 72.
    Liu K, Xia Z, Zhang Y, Wen Y, Wang D et al. 2005. Interaction between the movement protein of barley yellow dwarf virus and the cell nuclear envelope: role of a putative amphiphilic alpha-helix at the N-terminus of the movement protein. Biopolymers 79:86–96
    [Google Scholar]
  74. 73.
    Liu S, Sivakumar S, Wang Z, Bonning BC, Miller WA. 2009. The readthrough domain of pea enation mosaic virus coat protein is not essential for virus stability in the hemolymph of the pea aphid. Arch. Virol. 154:469–79
    [Google Scholar]
  75. 74.
    Liu Y, Zhai H, Zhao K, Wu B, Wang X. 2012. Two suppressors of RNA silencing encoded by cereal-infecting members of the family Luteoviridae. J. Gen. Virol. 93:1825–30
    [Google Scholar]
  76. 75.
    Malmstrom CM, Bigelow P, Trębicki P, Busch AK, Friel C et al. 2017. Crop-associated virus reduces the rooting depth of non-crop perennial native grass more than non-crop-associated virus with known viral suppressor of RNA silencing (VSR). Virus Res 241:172–84
    [Google Scholar]
  77. 76.
    Malmstrom CM, Shu R. 2004. Multiplexed RT-PCR for streamlined detection and separation of barley and cereal yellow dwarf viruses. J. Virol. Methods 120:69–78
    [Google Scholar]
  78. 77.
    Massawe DP, Stewart LR, Kamatenesi J, Asiimwe T, Redinbaugh MG. 2018. Complete sequence and diversity of a maize-associated Polerovirus in East Africa. Virus Genes 54:432–37
    [Google Scholar]
  79. 78.
    McKirdy SJ, Jones RAC, Nutter FW. 2002. Quantification of yield losses caused by Barley yellow dwarf virus in wheat and oats. Phytopathology 86:769–73
    [Google Scholar]
  80. 79.
    McNamara L, Gauthier K, Walsh L, Thébaud G, Gaffney M, Jacquot E. 2020. Management of yellow dwarf disease in Europe in a post-neonicotinoid agriculture. Pest Manag. Sci. 76:2276–85
    [Google Scholar]
  81. 80.
    Miller JS, Mayo MA. 1991. The location of the 5′ end of the potato leafroll luteovirus subgenomic coat protein mRNA. J. Gen. Virol. 72:2633–38
    [Google Scholar]
  82. 81.
    Miller WA, Giedroc DP 2010. Ribosomal frameshifting in decoding plant viral RNAs. Recoding: Expansion of Decoding Rules Enriches Gene Expression JF Atkins, RF Gesteland 193–220 London: Springer
    [Google Scholar]
  83. 82.
    Miller WA, Hercus T, Waterhouse PM, Gerlach WL. 1991. A satellite RNA of barley yellow dwarf virus contains a novel hammerhead structure in the self-cleavage domain. Virology 183:711–20
    [Google Scholar]
  84. 83.
    Miller WA, Jackson J, Feng Y 2015. Cis- and trans-regulation of luteovirus gene expression by the 3′ end of the viral genome. Virus Res 206:37–45
    [Google Scholar]
  85. 84.
    Miller WA, Liu S, Beckett R. 2002. Barley yellow dwarf virus: Luteoviridae or Tombusviridae?. Mol. Plant Pathol. 3:177–83
    [Google Scholar]
  86. 85.
    Miller WA, Shen R, Staplin W, Kanodia P. 2016. Noncoding RNAs of plant viruses and viroids: sponges of host translation and RNA interference machinery. Mol. Plant-Microbe Interact. 29:156–64
    [Google Scholar]
  87. 86.
    Miller WA, Waterhouse PM, Gerlach WL. 1988. Sequence and organisation of barley yellow dwarf virus genomic RNA. Nucleic Acids Res. 16:6097–111
    [Google Scholar]
  88. 87.
    Miras M, Miller WA, Truniger V, Aranda MA. 2017. Non-canonical translation in plant RNA viruses. Front. Plant Sci. 8:494
    [Google Scholar]
  89. 88.
    Mohan BR, Dinesh-Kumar SP, Miller WA 1995. Genes and cis-acting sequences involved in replication of barley yellow dwarf virus-PAV RNA. Virology 212:186–95
    [Google Scholar]
  90. 89.
    Moon JS, McCoppin NK, Domier LL. 2001. Effect of mutations in Barley yellow dwarf virus genomic RNA on the 5′ termini of subgenomic RNAs. Arch. Virol. 146:1399–406
    [Google Scholar]
  91. 90.
    Murphy JF, D'Arcy CJ, Clark JM Jr 1989. Barley yellow dwarf virus RNA has a 5′-terminal genome-linked protein. J. Gen. Virol. 70:2253–56
    [Google Scholar]
  92. 91.
    Mutterer JD, Stussi-Garaud C, Michler P, Richards KE, Jonard G, Ziegler-Graff V. 1999. Role of the beet western yellows virus readthrough protein in virus movement in Nicotiana clevelandii. J. Gen. Virol. 80:2771–78
    [Google Scholar]
  93. 92.
    Nagy PD, Feng Z. 2021. Tombusviruses orchestrate the host endomembrane system to create elaborate membranous replication organelles. Curr. Opin. Virol. 48:30–41
    [Google Scholar]
  94. 93.
    Nancarrow N, Aftab M, Hollaway G, Rodoni B, Trebicki P. 2021. Yield losses caused by Barley yellow dwarf virus-PAV infection in wheat and barley: a three-year field study in south-eastern Australia. Microorganisms 9:3645
    [Google Scholar]
  95. 94.
    Nass PH, Domier LL, Jakstys BP, D'Arcy CJ. 1998. In situ localization of barley yellow dwarf virus-PAV 17-kDa protein and nucleic acids in oats. Phytopathology 88:1031–39
    [Google Scholar]
  96. 95.
    Osman TA, Coutts RH, Buck KW. 2006. In vitro synthesis of minus-strand RNA by an isolated cereal yellow dwarf virus RNA-dependent RNA polymerase requires VPg and a stem-loop structure at the 3′ end of the virus RNA. J. Virol. 80:10743–51
    [Google Scholar]
  97. 96.
    Osman TA, Morris J, Coutts RH, Buck KW. 2006. Synthesis of genomic and subgenomic RNAs by a membrane-bound RNA-dependent RNA polymerase isolated from oat plants infected with cereal yellow dwarf virus. Arch. Virol. 151:2229–42
    [Google Scholar]
  98. 97.
    Oswald JW, Houston BE. 1953. The yellow-dwarf virus disease of cereal crops. Phytopathology 43:128–36
    [Google Scholar]
  99. 98.
    Peiffer ML, Gildow FE, Gray SM. 1997. Two distinct mechanisms regulate luteovirus transmission efficiency and specificity at the aphid salivary gland. J. Gen. Virol. 78:Pt. 3495–503
    [Google Scholar]
  100. 99.
    Peter KA, Gildow F, Palukaitis P, Gray SM. 2009. The C terminus of the polerovirus p5 readthrough domain limits virus infection to the phloem. J. Virol. 83:5419–29
    [Google Scholar]
  101. 100.
    Peters JS, Aguirre BA, DiPaola AD, Power AG. 2022. Ecology of yellow dwarf viruses in crops and grasslands: interactions in the context of climate change. Annu. Rev. Phytopathol. 60:283305
    [Google Scholar]
  102. 101.
    Rasochova L, Miller WA. 1996. Satellite RNA of barley yellow dwarf-RPV virus reduces accumulation of RPV helper virus RNA and attenuates RPV symptoms in oats. Mol. Plant-Microbe Interact. 9:646–50
    [Google Scholar]
  103. 102.
    Rasochova L, Passmore BK, Falk BW, Miller WA. 1997. The satellite RNA of barley yellow dwarf virus-RPV is supported by beet western yellows virus in dicotyledonous protoplasts and plants. Virology 231:182–91
    [Google Scholar]
  104. 103.
    Redila CD, Prakash V, Nouri S. 2021. Metagenomics analysis of the wheat virome identifies novel plant and fungal-associated viral sequences. Viruses 13:2457
    [Google Scholar]
  105. 104.
    Reinbold C, Lacombe S, Ziegler-Graff V, Scheidecker D, Wiss L et al. 2013. Closely related poleroviruses depend on distinct translation initiation factors to infect Arabidopsis thaliana. Mol. Plant-Microbe Interact. 26:257–65
    [Google Scholar]
  106. 105.
    Rochow WF. 1969. Biological properties of four isolates of barley yellow dwarf virus. Phytopathology 59:1580–89
    [Google Scholar]
  107. 106.
    Rochow WF. 1970. Barley yellow dwarf virus: phenotype mixing and vector specificity. Science 167:875–78
    [Google Scholar]
  108. 107.
    Rochow WF, Muller I. 1971. Fifth variant of barley yellow dwarf virus in New York. Plant Dis. Rep. 55:874–77
    [Google Scholar]
  109. 108.
    Rotenberg D, Bockus WW, Whitfield AE, Hervey K, Baker KD et al. 2016. Occurrence of viruses and associated grain yields of paired symptomatic and nonsymptomatic tillers in Kansas winter wheat fields. Phytopathology 106:202–10
    [Google Scholar]
  110. 109.
    Deleted in proof
  111. 110.
    Rybicki EP. 2015. A top ten list for economically important plant viruses. Arch. Virol. 160:17–20
    [Google Scholar]
  112. 111.
    Shams-bakhsh M, Symons RH. 1997. Barley yellow dwarf virus-PAV RNA does not have a VPg. Arch. Virol. 142:2529–35
    [Google Scholar]
  113. 112.
    Sharma SD, Kraft JJ, Miller WA, Goss DJ. 2015. Recruitment of the 40S ribosome subunit to the 3′-untranslated region (UTR) of a viral mRNA, via the eIF4 complex, facilitates cap-independent translation. J. Biol. Chem. 290:11268–81
    [Google Scholar]
  114. 113.
    Shen R, Miller WA. 2004. Subgenomic RNA as a riboregulator: negative regulation of RNA replication by Barley yellow dwarf virus subgenomic RNA 2. Virology 327:196–205
    [Google Scholar]
  115. 114.
    Shen R, Rakotondrafara AM, Miller WA. 2006. Trans regulation of cap-independent translation by a viral subgenomic RNA. J. Virol. 80:10045–54
    [Google Scholar]
  116. 115.
    Smirnova E, Firth AE, Miller WA, Scheidecker D, Brault V et al. 2015. Discovery of a small non-AUG-initiated ORF in poleroviruses and luteoviruses that is required for long-distance movement. PLOS Pathog 11:e1004868
    [Google Scholar]
  117. 116.
    Sõmera M, Massart S, Tamisier L, Sooväli P, Sathees K, Kvarnheden A. 2021. A survey using high-throughput sequencing suggests that the diversity of Cereal and Barley yellow dwarf viruses is underestimated. Front. Microbiol. 12:673218
    [Google Scholar]
  118. 117.
    Song SI, Miller WA. 2004. Cis and trans requirements for rolling circle replication of a satellite RNA. J. Virol. 78:3072–82
    [Google Scholar]
  119. 118.
    Song SI, Silver SL, Aulik MA, Rasochova L, Mohan BR, Miller WA. 1999. Satellite cereal yellow dwarf virus-RPV (satRPV) RNA requires a double hammerhead for self-cleavage and an alternative structure for replication. J. Mol. Biol. 293:781–93
    [Google Scholar]
  120. 119.
    Steckelberg AL, Vicens Q, Kieft JS. 2018. Exoribonuclease-resistant RNAs exist within both coding and noncoding subgenomic RNAs. mBio 9:6e02461–18
    [Google Scholar]
  121. 120.
    Stewart LR, Todd J, Willie K, Massawe D, Khatri N. 2020. A recently discovered maize polerovirus causes leaf reddening symptoms in several maize genotypes and is transmitted by both the corn leaf aphid (Rhopalosiphum maidis) and the bird cherry-oat aphid (Rhopalosiphum padi). Plant Dis 104:1589–92
    [Google Scholar]
  122. 121.
    Stewart LR, Willie K. 2021. Maize yellow mosaic virus interacts with Maize chlorotic mottle virus and Sugarcane mosaic virus in mixed infections, but does not cause maize lethal necrosis. Plant Dis 105:3008–14
    [Google Scholar]
  123. 122.
    Strauss AT, Bowerman L, Porath-Krause A, Seabloom EW, Borer ET. 2021. Mixed infection, risk projection, and misdirection: interactions among pathogens alter links between host resources and disease. Ecol. Evol. 11:9599–609
    [Google Scholar]
  124. 123.
    Svanella-Dumas L, Candresse T, Hulle M, Marais A. 2013. Distribution of Barley yellow dwarf virus-PAV in the sub-Antarctic Kerguelen Islands and characterization of two new Luteovirus species. PLOS ONE 8:e67231
    [Google Scholar]
  125. 124.
    Tajima Y, Iwakawa HO, Kaido M, Mise K, Okuno T. 2011. A long-distance RNA-RNA interaction plays an important role in programmed-1 ribosomal frameshifting in the translation of p88 replicase protein of Red clover necrotic mosaic virus. Virology 417:169–78
    [Google Scholar]
  126. 125.
    Tamborindeguy C, Bereman MS, DeBlasio S, Igwe D, Smith DM et al. 2013. Genomic and proteomic analysis of Schizaphis graminum reveals cyclophilin proteins are involved in the transmission of cereal yellow dwarf virus. PLOS ONE 8:e71620
    [Google Scholar]
  127. 126.
    Treder K, Pettit Kneller EL, Allen EM, Wang Z, Browning KS, Miller WA 2008. The 3′ cap-independent translation element of Barley yellow dwarf virus binds eIF4F via the eIF4G subunit to initiate translation. RNA 14:134–47
    [Google Scholar]
  128. 127.
    Ueng PP, Vincent JR, Kawata EE, Lei C-H, Lister RM, Larkins BA. 1992. Nucleotide sequence analysis of the genomes of the MAV-PS1 and P-PAV isolates of barley yellow dwarf virus. J. Gen. Virol. 73:487–92
    [Google Scholar]
  129. 128.
    van den Heuvel JF, Bruyere A, Hogenhout SA, Ziegler-Graff V, Brault V et al. 1997. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistance in the aphid. J. Virol. 71:7258–65
    [Google Scholar]
  130. 129.
    van der Wilk F, Verbeek M, Dullemans AM, van den Heuvel JF. 1997. The genome-linked protein of potato leafroll virus is located downstream of the putative protease domain of the ORF1 product. Virology 234:300–3
    [Google Scholar]
  131. 130.
    Vincent JR, Lister RM, Larkins BA. 1991. Nucleotide sequence analysis and genomic organization of the NY-RPV isolate of barley yellow dwarf virus. J. Gen. Virol. 72:2347–55
    [Google Scholar]
  132. 130a.
    Walker PJ, Siddell SG, Lefkowitz EJ, Mushegian AR, Adriaenssens EMet al 2021. Changes to virus taxonomy and to the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses. Arch. Virol 166:263348
    [Google Scholar]
  133. 131.
    Walls J III, Rajotte E, Rosa C. 2019. The past, present and future of barley yellow dwarf management. Agriculture 9:23
    [Google Scholar]
  134. 132.
    Wamaitha MJ, Nigam D, Maina S, Stomeo F, Wangai A et al. 2018. Metagenomic analysis of viruses associated with maize lethal necrosis in Kenya. Virol. J. 15:90
    [Google Scholar]
  135. 133.
    Wang F, Zhao X, Dong Q, Zhou B, Gao Z. 2018. Characterization of an RNA silencing suppressor encoded by maize yellow dwarf virus-RMV2. Virus Genes 54:570–77
    [Google Scholar]
  136. 134.
    Wang MB, Abbott DC, Waterhouse PM. 2000. A single copy of a virus-derived transgene encoding hairpin RNA gives immunity to barley yellow dwarf virus. Mol. Plant Pathol. 1:347–56
    [Google Scholar]
  137. 135.
    Wang MB, Cheng Z, Keese P, Graham MW, Larkin PJ, Waterhouse PM. 1998. Comparison of the coat protein, movement protein and RNA polymerase gene sequences of Australian, Chinese, and American isolates of barley yellow dwarf virus transmitted by Rhopalosiphum padi. Arch. Virol. 143:1005–13
    [Google Scholar]
  138. 136.
    Wang MB, Wesley SV, Finnegan EJ, Smith NA, Waterhouse PM. 2001. Replicating satellite RNA induces sequence-specific DNA methylation and truncated transcripts in plants. RNA 7:16–28
    [Google Scholar]
  139. 137.
    Wang S, Browning KS, Miller WA. 1997. A viral sequence in the 3′-untranslated region mimics a 5′ cap in facilitating translation of uncapped mRNA. EMBO J 16:4107–16
    [Google Scholar]
  140. 138.
    Wang S, Guo L, Allen E, Miller WA 1999. A potential mechanism for selective control of cap-independent translation by a viral RNA sequence in cis and in trans. RNA 5:728–38
    [Google Scholar]
  141. 139.
    Wang S, Miller WA. 1995. A sequence located 4.5 to 5 kilobases from the 5′ end of the barley yellow dwarf virus (PAV) genome strongly stimulates translation of uncapped mRNA. J. Biol. Chem. 270:13446–52
    [Google Scholar]
  142. 140.
    Wiangjun H, Anderson JM. 2004. The basis for thinopyrum-derived resistance to Cereal yellow dwarf virus. Phytopathology 94:1102–6
    [Google Scholar]
  143. 141.
    Wolf YI, Kazlauskas D, Iranzo J, Lucía-Sanz A, Kuhn JH et al. 2018. Origins and evolution of the global RNA virome. mBio 9:e02329–18
    [Google Scholar]
  144. 142.
    Xia Z, Cao R, Sun K, Zhang H. 2012. The movement protein of barley yellow dwarf virus-GAV self-interacts and forms homodimers in vitro and in vivo. Arch. Virol. 157:1233–39
    [Google Scholar]
  145. 143.
    Xiong Z, Kim KH, Kendall TL, Lommel SA. 1993. Synthesis of the putative red clover necrotic mosaic virus RNA polymerase by ribosomal frameshifting in vitro. Virology 193:213–21
    [Google Scholar]
  146. 144.
    Xu Y, Da Silva WL, Qian Y, Gray SM 2018. An aromatic amino acid and associated helix in the C-terminus of the potato leafroll virus minor capsid protein regulate systemic infection and symptom expression. PLOS Pathog 14:e1007451
    [Google Scholar]
  147. 145.
    Xu Y, Ju HJ, DeBlasio S, Carino EJ, Johnson R et al. 2018. A stem-loop structure in Potato leafroll virus open reading frame 5 (ORF5) is essential for readthrough translation of the coat protein ORF stop codon 700 bases upstream. J. Virol. 92:11e01544–17
    [Google Scholar]
  148. 146.
    Zhang P, Liu Y, Liu W, Cao M, Massart S, Wang X. 2017. Identification, characterization and full-length sequence analysis of a novel polerovirus associated with wheat leaf yellowing disease. Front. Microbiol. 8:1689
    [Google Scholar]
  149. 147.
    Zhang W, Cheng Z, Xu L, Wu M, Waterhouse P et al. 2009. The complete nucleotide sequence of the barley yellow dwarf GPV isolate from China shows that it is a new member of the genus Polerovirus. Arch. Virol. 154:1125–28
    [Google Scholar]
  150. 148.
    Zhao F, Lim S, Yoo RH, Igori D, Kim SM et al. 2016. The complete genomic sequence of a tentative new polerovirus identified in barley in South Korea. Arch. Virol. 161:2047–50
    [Google Scholar]
  151. 149.
    Zhao P, Liu Q, Miller WA, Goss DJ. 2017. Eukaryotic translation initiation factor 4G (eIF4G) coordinates interactions with eIF4A, eIF4B and eIF4E in binding and translation of the barley yellow dwarf virus 3′ cap-independent translation element (BTE). J. Biol. Chem. 292:5921–31
    [Google Scholar]
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